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SKIN-COBRA (Consortium for Brachytherapy data Analysis) ontology: The first step towards interdisciplinary standardized data collection for personalized oncology in skin cancer

PURPOSE: The primary objective of the SKIN-COBRA (Consortium for Brachytherapy data Analysis) ontology is to define a specific terminological system to standardize data collection for non-melanoma skin cancer patients treated with brachytherapy (BT, interventional radiotherapy). Through ontological...

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Autores principales: Lancellotta, Valentina, Guinot, Josè Luis, Fionda, Bruno, Rembielak, Agata, Di Stefani, Alessandro, Gentileschi, Stefano, Federico, Francesco, Rossi, Ernesto, Guix, Benjamin, Chyrek, Artur Jan, Meritxell, Arenas, Villalba, Silvia Rodriguez, Colloca, Giuseppe Ferdinando, Dinapoli, Nicola, Masciocchi, Carlotta, Lenkowicz, Jacopo, Capocchiano, Nicola Dino, Damiani, Andrea, Valentini, Vincenzo, Kovács, Gyorgy, Tagliaferri, Luca
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Termedia Publishing House 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7207239/
https://www.ncbi.nlm.nih.gov/pubmed/32395133
http://dx.doi.org/10.5114/jcb.2020.94579
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author Lancellotta, Valentina
Guinot, Josè Luis
Fionda, Bruno
Rembielak, Agata
Di Stefani, Alessandro
Gentileschi, Stefano
Federico, Francesco
Rossi, Ernesto
Guix, Benjamin
Chyrek, Artur Jan
Meritxell, Arenas
Villalba, Silvia Rodriguez
Colloca, Giuseppe Ferdinando
Dinapoli, Nicola
Masciocchi, Carlotta
Lenkowicz, Jacopo
Capocchiano, Nicola Dino
Damiani, Andrea
Valentini, Vincenzo
Kovács, Gyorgy
Tagliaferri, Luca
author_facet Lancellotta, Valentina
Guinot, Josè Luis
Fionda, Bruno
Rembielak, Agata
Di Stefani, Alessandro
Gentileschi, Stefano
Federico, Francesco
Rossi, Ernesto
Guix, Benjamin
Chyrek, Artur Jan
Meritxell, Arenas
Villalba, Silvia Rodriguez
Colloca, Giuseppe Ferdinando
Dinapoli, Nicola
Masciocchi, Carlotta
Lenkowicz, Jacopo
Capocchiano, Nicola Dino
Damiani, Andrea
Valentini, Vincenzo
Kovács, Gyorgy
Tagliaferri, Luca
author_sort Lancellotta, Valentina
collection PubMed
description PURPOSE: The primary objective of the SKIN-COBRA (Consortium for Brachytherapy data Analysis) ontology is to define a specific terminological system to standardize data collection for non-melanoma skin cancer patients treated with brachytherapy (BT, interventional radiotherapy). Through ontological characterization of information, it is possible to find, isolate, organize, and integrate its meaning. MATERIAL AND METHODS: SKIN-COBRA is a standardized data collection consortium for non-melanoma skin patients treated with BT, including 8 cancer centers. Its ontology was firstly defined by a multicentric and multidisciplinary working group and evaluated by the consortium, followed by a multi-professional technical commission involving a mathematician, an engineer, a physician with experience in data storage, a programmer, and a software expert. RESULTS: Two hundred and ninety variables were defined in 10 input forms. There are 3 levels, with each offering a specific type of analysis: 1. Registry level (epidemiology analysis); 2. Procedures level (standard oncology analysis); 3. Research level (radiomics analysis). The ontology was approved by the technical commission and consortium, and an ad-hoc software system was defined to be implemented in the SKIN-COBRA consortium. CONCLUSIONS: Large databases are natural extension of traditional statistical approaches, a valuable and increasingly necessary tool for modern healthcare system. Future analysis of the collected multinational and multicenter data will show whether the use of the system can produce high-quality evidence to support multidisciplinary management of non-melanoma skin cancer and utilizing this information for personalized treatment decisions.
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spelling pubmed-72072392020-05-11 SKIN-COBRA (Consortium for Brachytherapy data Analysis) ontology: The first step towards interdisciplinary standardized data collection for personalized oncology in skin cancer Lancellotta, Valentina Guinot, Josè Luis Fionda, Bruno Rembielak, Agata Di Stefani, Alessandro Gentileschi, Stefano Federico, Francesco Rossi, Ernesto Guix, Benjamin Chyrek, Artur Jan Meritxell, Arenas Villalba, Silvia Rodriguez Colloca, Giuseppe Ferdinando Dinapoli, Nicola Masciocchi, Carlotta Lenkowicz, Jacopo Capocchiano, Nicola Dino Damiani, Andrea Valentini, Vincenzo Kovács, Gyorgy Tagliaferri, Luca J Contemp Brachytherapy Original Paper PURPOSE: The primary objective of the SKIN-COBRA (Consortium for Brachytherapy data Analysis) ontology is to define a specific terminological system to standardize data collection for non-melanoma skin cancer patients treated with brachytherapy (BT, interventional radiotherapy). Through ontological characterization of information, it is possible to find, isolate, organize, and integrate its meaning. MATERIAL AND METHODS: SKIN-COBRA is a standardized data collection consortium for non-melanoma skin patients treated with BT, including 8 cancer centers. Its ontology was firstly defined by a multicentric and multidisciplinary working group and evaluated by the consortium, followed by a multi-professional technical commission involving a mathematician, an engineer, a physician with experience in data storage, a programmer, and a software expert. RESULTS: Two hundred and ninety variables were defined in 10 input forms. There are 3 levels, with each offering a specific type of analysis: 1. Registry level (epidemiology analysis); 2. Procedures level (standard oncology analysis); 3. Research level (radiomics analysis). The ontology was approved by the technical commission and consortium, and an ad-hoc software system was defined to be implemented in the SKIN-COBRA consortium. CONCLUSIONS: Large databases are natural extension of traditional statistical approaches, a valuable and increasingly necessary tool for modern healthcare system. Future analysis of the collected multinational and multicenter data will show whether the use of the system can produce high-quality evidence to support multidisciplinary management of non-melanoma skin cancer and utilizing this information for personalized treatment decisions. Termedia Publishing House 2020-04-30 2020-04 /pmc/articles/PMC7207239/ /pubmed/32395133 http://dx.doi.org/10.5114/jcb.2020.94579 Text en Copyright © 2020 Termedia http://creativecommons.org/licenses/by-nc-sa/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0). License (http://creativecommons.org/licenses/by-nc-sa/4.0/)
spellingShingle Original Paper
Lancellotta, Valentina
Guinot, Josè Luis
Fionda, Bruno
Rembielak, Agata
Di Stefani, Alessandro
Gentileschi, Stefano
Federico, Francesco
Rossi, Ernesto
Guix, Benjamin
Chyrek, Artur Jan
Meritxell, Arenas
Villalba, Silvia Rodriguez
Colloca, Giuseppe Ferdinando
Dinapoli, Nicola
Masciocchi, Carlotta
Lenkowicz, Jacopo
Capocchiano, Nicola Dino
Damiani, Andrea
Valentini, Vincenzo
Kovács, Gyorgy
Tagliaferri, Luca
SKIN-COBRA (Consortium for Brachytherapy data Analysis) ontology: The first step towards interdisciplinary standardized data collection for personalized oncology in skin cancer
title SKIN-COBRA (Consortium for Brachytherapy data Analysis) ontology: The first step towards interdisciplinary standardized data collection for personalized oncology in skin cancer
title_full SKIN-COBRA (Consortium for Brachytherapy data Analysis) ontology: The first step towards interdisciplinary standardized data collection for personalized oncology in skin cancer
title_fullStr SKIN-COBRA (Consortium for Brachytherapy data Analysis) ontology: The first step towards interdisciplinary standardized data collection for personalized oncology in skin cancer
title_full_unstemmed SKIN-COBRA (Consortium for Brachytherapy data Analysis) ontology: The first step towards interdisciplinary standardized data collection for personalized oncology in skin cancer
title_short SKIN-COBRA (Consortium for Brachytherapy data Analysis) ontology: The first step towards interdisciplinary standardized data collection for personalized oncology in skin cancer
title_sort skin-cobra (consortium for brachytherapy data analysis) ontology: the first step towards interdisciplinary standardized data collection for personalized oncology in skin cancer
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7207239/
https://www.ncbi.nlm.nih.gov/pubmed/32395133
http://dx.doi.org/10.5114/jcb.2020.94579
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