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Evaluation of EELS spectrum imaging data by spectral components and factors from multivariate analysis
Multivariate analysis is a powerful tool to process spectrum imaging datasets of electron energy loss spectroscopy. Most spatial variance of the datasets can be explained by a limited numbers of components. We explore such dimension reduction to facilitate quantitative analyses of spectrum imaging d...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7207561/ https://www.ncbi.nlm.nih.gov/pubmed/29136225 http://dx.doi.org/10.1093/jmicro/dfx091 |
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author | Zhang, Siyuan Scheu, Christina |
author_facet | Zhang, Siyuan Scheu, Christina |
author_sort | Zhang, Siyuan |
collection | PubMed |
description | Multivariate analysis is a powerful tool to process spectrum imaging datasets of electron energy loss spectroscopy. Most spatial variance of the datasets can be explained by a limited numbers of components. We explore such dimension reduction to facilitate quantitative analyses of spectrum imaging data, supervising the spectral components instead of spectra at individual pixels. In this study, we use non-negative matrix factorization to decompose datasets from Fe(2)O(3) thin films with different Sn doping profiles on SnO(2) and Si substrates. Case studies are presented to analyse spectral features including background models, signal integrals, peak positions and widths. Matlab codes are written to guide microscopists to perform these data analyses. |
format | Online Article Text |
id | pubmed-7207561 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-72075612020-05-15 Evaluation of EELS spectrum imaging data by spectral components and factors from multivariate analysis Zhang, Siyuan Scheu, Christina Microscopy (Oxf) Article Multivariate analysis is a powerful tool to process spectrum imaging datasets of electron energy loss spectroscopy. Most spatial variance of the datasets can be explained by a limited numbers of components. We explore such dimension reduction to facilitate quantitative analyses of spectrum imaging data, supervising the spectral components instead of spectra at individual pixels. In this study, we use non-negative matrix factorization to decompose datasets from Fe(2)O(3) thin films with different Sn doping profiles on SnO(2) and Si substrates. Case studies are presented to analyse spectral features including background models, signal integrals, peak positions and widths. Matlab codes are written to guide microscopists to perform these data analyses. Oxford University Press 2018-03 2017-11-09 /pmc/articles/PMC7207561/ /pubmed/29136225 http://dx.doi.org/10.1093/jmicro/dfx091 Text en © The Author 2017. Published by Oxford University Press on behalf of The Japanese Society of Microscopy. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Article Zhang, Siyuan Scheu, Christina Evaluation of EELS spectrum imaging data by spectral components and factors from multivariate analysis |
title | Evaluation of EELS spectrum imaging data by spectral components and factors from multivariate analysis |
title_full | Evaluation of EELS spectrum imaging data by spectral components and factors from multivariate analysis |
title_fullStr | Evaluation of EELS spectrum imaging data by spectral components and factors from multivariate analysis |
title_full_unstemmed | Evaluation of EELS spectrum imaging data by spectral components and factors from multivariate analysis |
title_short | Evaluation of EELS spectrum imaging data by spectral components and factors from multivariate analysis |
title_sort | evaluation of eels spectrum imaging data by spectral components and factors from multivariate analysis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7207561/ https://www.ncbi.nlm.nih.gov/pubmed/29136225 http://dx.doi.org/10.1093/jmicro/dfx091 |
work_keys_str_mv | AT zhangsiyuan evaluationofeelsspectrumimagingdatabyspectralcomponentsandfactorsfrommultivariateanalysis AT scheuchristina evaluationofeelsspectrumimagingdatabyspectralcomponentsandfactorsfrommultivariateanalysis |