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A novel machine learning algorithm to predict disease free survival after resection of hepatocellular carcinoma
BACKGROUND: Due to organ shortage, liver transplantation (LT) in hepatocellular carcinoma (HCC) patients can only be offered subsidiary to other curative treatments, including liver resection (LR). We aimed at developing and validating a machine-learning algorithm (ML) to predict which patients are...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
AME Publishing Company
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7210189/ https://www.ncbi.nlm.nih.gov/pubmed/32395478 http://dx.doi.org/10.21037/atm.2020.04.16 |
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author | Schoenberg, Markus Bo Bucher, Julian Nikolaus Koch, Dominik Börner, Nikolaus Hesse, Sebastian De Toni, Enrico Narciso Seidensticker, Max Angele, Martin Kurt Klein, Christoph Bazhin, Alexandr V. Werner, Jens Guba, Markus Otto |
author_facet | Schoenberg, Markus Bo Bucher, Julian Nikolaus Koch, Dominik Börner, Nikolaus Hesse, Sebastian De Toni, Enrico Narciso Seidensticker, Max Angele, Martin Kurt Klein, Christoph Bazhin, Alexandr V. Werner, Jens Guba, Markus Otto |
author_sort | Schoenberg, Markus Bo |
collection | PubMed |
description | BACKGROUND: Due to organ shortage, liver transplantation (LT) in hepatocellular carcinoma (HCC) patients can only be offered subsidiary to other curative treatments, including liver resection (LR). We aimed at developing and validating a machine-learning algorithm (ML) to predict which patients are sufficiently treated by LR. METHODS: Twenty-six preoperatively available routine laboratory values along with standard clinical-pathological parameters [including the modified Glascow Prognostic Score (mGPS), the Kings Score (KS) and the Model of Endstage Liver Disease (MELD)] were retrieved from 181 patients who underwent partial LR due to HCC in non-cirrhosis or compensated cirrhosis from January 2007 through March 2018 at our institution. These data were processed using a Random Forest (RF)-based workflow, which included preprocessing, recursive feature elimination (RFE), resampling, training and cross-validation of the RF model. A subset of untouched patient data was used as a test cohort. Basing on the RF prediction, test data could be stratified according to high (HR) or low risk (LR) profile characteristics. RESULTS: RFE analysis provided 6 relevant outcome predictors: mGPS, aPTT, CRP, largest tumor size, number of lesions and age at time of operation. After down-sampling, the predictive value of our model was 0.788 (0.658–0.919) for early DFS. 16.7% of HR and 74.2% of LR patients survived 2 years of follow-up (P<0.001). CONCLUSIONS: Our RF model, based solely on clinical parameters, proved to be a powerful predictor of DFS. These results warrant a prospective study to improve the model for selection of suitable candidates for LR as alternative to transplantation. The predictive model is available online: tiny.cc/hcc_model. |
format | Online Article Text |
id | pubmed-7210189 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | AME Publishing Company |
record_format | MEDLINE/PubMed |
spelling | pubmed-72101892020-05-11 A novel machine learning algorithm to predict disease free survival after resection of hepatocellular carcinoma Schoenberg, Markus Bo Bucher, Julian Nikolaus Koch, Dominik Börner, Nikolaus Hesse, Sebastian De Toni, Enrico Narciso Seidensticker, Max Angele, Martin Kurt Klein, Christoph Bazhin, Alexandr V. Werner, Jens Guba, Markus Otto Ann Transl Med Original Article BACKGROUND: Due to organ shortage, liver transplantation (LT) in hepatocellular carcinoma (HCC) patients can only be offered subsidiary to other curative treatments, including liver resection (LR). We aimed at developing and validating a machine-learning algorithm (ML) to predict which patients are sufficiently treated by LR. METHODS: Twenty-six preoperatively available routine laboratory values along with standard clinical-pathological parameters [including the modified Glascow Prognostic Score (mGPS), the Kings Score (KS) and the Model of Endstage Liver Disease (MELD)] were retrieved from 181 patients who underwent partial LR due to HCC in non-cirrhosis or compensated cirrhosis from January 2007 through March 2018 at our institution. These data were processed using a Random Forest (RF)-based workflow, which included preprocessing, recursive feature elimination (RFE), resampling, training and cross-validation of the RF model. A subset of untouched patient data was used as a test cohort. Basing on the RF prediction, test data could be stratified according to high (HR) or low risk (LR) profile characteristics. RESULTS: RFE analysis provided 6 relevant outcome predictors: mGPS, aPTT, CRP, largest tumor size, number of lesions and age at time of operation. After down-sampling, the predictive value of our model was 0.788 (0.658–0.919) for early DFS. 16.7% of HR and 74.2% of LR patients survived 2 years of follow-up (P<0.001). CONCLUSIONS: Our RF model, based solely on clinical parameters, proved to be a powerful predictor of DFS. These results warrant a prospective study to improve the model for selection of suitable candidates for LR as alternative to transplantation. The predictive model is available online: tiny.cc/hcc_model. AME Publishing Company 2020-04 /pmc/articles/PMC7210189/ /pubmed/32395478 http://dx.doi.org/10.21037/atm.2020.04.16 Text en 2020 Annals of Translational Medicine. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Original Article Schoenberg, Markus Bo Bucher, Julian Nikolaus Koch, Dominik Börner, Nikolaus Hesse, Sebastian De Toni, Enrico Narciso Seidensticker, Max Angele, Martin Kurt Klein, Christoph Bazhin, Alexandr V. Werner, Jens Guba, Markus Otto A novel machine learning algorithm to predict disease free survival after resection of hepatocellular carcinoma |
title | A novel machine learning algorithm to predict disease free survival after resection of hepatocellular carcinoma |
title_full | A novel machine learning algorithm to predict disease free survival after resection of hepatocellular carcinoma |
title_fullStr | A novel machine learning algorithm to predict disease free survival after resection of hepatocellular carcinoma |
title_full_unstemmed | A novel machine learning algorithm to predict disease free survival after resection of hepatocellular carcinoma |
title_short | A novel machine learning algorithm to predict disease free survival after resection of hepatocellular carcinoma |
title_sort | novel machine learning algorithm to predict disease free survival after resection of hepatocellular carcinoma |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7210189/ https://www.ncbi.nlm.nih.gov/pubmed/32395478 http://dx.doi.org/10.21037/atm.2020.04.16 |
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