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Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry
Reaction times, activation energies, branching ratios, yields, and many other quantitative attributes are important for precise organic syntheses and generating detailed reaction mechanisms. Often, it would be useful to be able to classify proposed reactions as fast or slow. However, quantitative ch...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7210263/ https://www.ncbi.nlm.nih.gov/pubmed/32385318 http://dx.doi.org/10.1038/s41597-020-0460-4 |
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author | Grambow, Colin A. Pattanaik, Lagnajit Green, William H. |
author_facet | Grambow, Colin A. Pattanaik, Lagnajit Green, William H. |
author_sort | Grambow, Colin A. |
collection | PubMed |
description | Reaction times, activation energies, branching ratios, yields, and many other quantitative attributes are important for precise organic syntheses and generating detailed reaction mechanisms. Often, it would be useful to be able to classify proposed reactions as fast or slow. However, quantitative chemical reaction data, especially for atom-mapped reactions, are difficult to find in existing databases. Therefore, we used automated potential energy surface exploration to generate 12,000 organic reactions involving H, C, N, and O atoms calculated at the ωB97X-D3/def2-TZVP quantum chemistry level. We report the results of geometry optimizations and frequency calculations for reactants, products, and transition states of all reactions. Additionally, we extracted atom-mapped reaction SMILES, activation energies, and enthalpies of reaction. We believe that this data will accelerate progress in automated methods for organic synthesis and reaction mechanism generation—for example, by enabling the development of novel machine learning models for quantitative reaction prediction. |
format | Online Article Text |
id | pubmed-7210263 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-72102632020-05-14 Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry Grambow, Colin A. Pattanaik, Lagnajit Green, William H. Sci Data Data Descriptor Reaction times, activation energies, branching ratios, yields, and many other quantitative attributes are important for precise organic syntheses and generating detailed reaction mechanisms. Often, it would be useful to be able to classify proposed reactions as fast or slow. However, quantitative chemical reaction data, especially for atom-mapped reactions, are difficult to find in existing databases. Therefore, we used automated potential energy surface exploration to generate 12,000 organic reactions involving H, C, N, and O atoms calculated at the ωB97X-D3/def2-TZVP quantum chemistry level. We report the results of geometry optimizations and frequency calculations for reactants, products, and transition states of all reactions. Additionally, we extracted atom-mapped reaction SMILES, activation energies, and enthalpies of reaction. We believe that this data will accelerate progress in automated methods for organic synthesis and reaction mechanism generation—for example, by enabling the development of novel machine learning models for quantitative reaction prediction. Nature Publishing Group UK 2020-05-08 /pmc/articles/PMC7210263/ /pubmed/32385318 http://dx.doi.org/10.1038/s41597-020-0460-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Grambow, Colin A. Pattanaik, Lagnajit Green, William H. Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry |
title | Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry |
title_full | Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry |
title_fullStr | Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry |
title_full_unstemmed | Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry |
title_short | Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry |
title_sort | reactants, products, and transition states of elementary chemical reactions based on quantum chemistry |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7210263/ https://www.ncbi.nlm.nih.gov/pubmed/32385318 http://dx.doi.org/10.1038/s41597-020-0460-4 |
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