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Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry

Reaction times, activation energies, branching ratios, yields, and many other quantitative attributes are important for precise organic syntheses and generating detailed reaction mechanisms. Often, it would be useful to be able to classify proposed reactions as fast or slow. However, quantitative ch...

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Autores principales: Grambow, Colin A., Pattanaik, Lagnajit, Green, William H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7210263/
https://www.ncbi.nlm.nih.gov/pubmed/32385318
http://dx.doi.org/10.1038/s41597-020-0460-4
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author Grambow, Colin A.
Pattanaik, Lagnajit
Green, William H.
author_facet Grambow, Colin A.
Pattanaik, Lagnajit
Green, William H.
author_sort Grambow, Colin A.
collection PubMed
description Reaction times, activation energies, branching ratios, yields, and many other quantitative attributes are important for precise organic syntheses and generating detailed reaction mechanisms. Often, it would be useful to be able to classify proposed reactions as fast or slow. However, quantitative chemical reaction data, especially for atom-mapped reactions, are difficult to find in existing databases. Therefore, we used automated potential energy surface exploration to generate 12,000 organic reactions involving H, C, N, and O atoms calculated at the ωB97X-D3/def2-TZVP quantum chemistry level. We report the results of geometry optimizations and frequency calculations for reactants, products, and transition states of all reactions. Additionally, we extracted atom-mapped reaction SMILES, activation energies, and enthalpies of reaction. We believe that this data will accelerate progress in automated methods for organic synthesis and reaction mechanism generation—for example, by enabling the development of novel machine learning models for quantitative reaction prediction.
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spelling pubmed-72102632020-05-14 Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry Grambow, Colin A. Pattanaik, Lagnajit Green, William H. Sci Data Data Descriptor Reaction times, activation energies, branching ratios, yields, and many other quantitative attributes are important for precise organic syntheses and generating detailed reaction mechanisms. Often, it would be useful to be able to classify proposed reactions as fast or slow. However, quantitative chemical reaction data, especially for atom-mapped reactions, are difficult to find in existing databases. Therefore, we used automated potential energy surface exploration to generate 12,000 organic reactions involving H, C, N, and O atoms calculated at the ωB97X-D3/def2-TZVP quantum chemistry level. We report the results of geometry optimizations and frequency calculations for reactants, products, and transition states of all reactions. Additionally, we extracted atom-mapped reaction SMILES, activation energies, and enthalpies of reaction. We believe that this data will accelerate progress in automated methods for organic synthesis and reaction mechanism generation—for example, by enabling the development of novel machine learning models for quantitative reaction prediction. Nature Publishing Group UK 2020-05-08 /pmc/articles/PMC7210263/ /pubmed/32385318 http://dx.doi.org/10.1038/s41597-020-0460-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Grambow, Colin A.
Pattanaik, Lagnajit
Green, William H.
Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry
title Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry
title_full Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry
title_fullStr Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry
title_full_unstemmed Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry
title_short Reactants, products, and transition states of elementary chemical reactions based on quantum chemistry
title_sort reactants, products, and transition states of elementary chemical reactions based on quantum chemistry
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7210263/
https://www.ncbi.nlm.nih.gov/pubmed/32385318
http://dx.doi.org/10.1038/s41597-020-0460-4
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