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An improved high-quality genome assembly and annotation of Tibetan hulless barley

Hulless barley (Hordeum vulgare L. var. nudum) is a barley variety that has loose husk cover of the caryopses. Because of the ease in processing and edibility, hulless barley has been locally cultivated and used as human food. For example, in Tibetan Plateau, hulless barley is the staple food for hu...

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Autores principales: Zeng, Xingquan, Xu, Tong, Ling, Zhihao, Wang, Yulin, Li, Xiangfeng, Xu, Shuqing, Xu, Qijun, Zha, Sang, Qimei, Wangmu, Basang, Yuzhen, Dunzhu, Jiabu, Yu, Mingzhai, Yuan, Hongjun, Nyima, Tashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7210891/
https://www.ncbi.nlm.nih.gov/pubmed/32385314
http://dx.doi.org/10.1038/s41597-020-0480-0
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author Zeng, Xingquan
Xu, Tong
Ling, Zhihao
Wang, Yulin
Li, Xiangfeng
Xu, Shuqing
Xu, Qijun
Zha, Sang
Qimei, Wangmu
Basang, Yuzhen
Dunzhu, Jiabu
Yu, Mingzhai
Yuan, Hongjun
Nyima, Tashi
author_facet Zeng, Xingquan
Xu, Tong
Ling, Zhihao
Wang, Yulin
Li, Xiangfeng
Xu, Shuqing
Xu, Qijun
Zha, Sang
Qimei, Wangmu
Basang, Yuzhen
Dunzhu, Jiabu
Yu, Mingzhai
Yuan, Hongjun
Nyima, Tashi
author_sort Zeng, Xingquan
collection PubMed
description Hulless barley (Hordeum vulgare L. var. nudum) is a barley variety that has loose husk cover of the caryopses. Because of the ease in processing and edibility, hulless barley has been locally cultivated and used as human food. For example, in Tibetan Plateau, hulless barley is the staple food for human and essential livestock feed. Although the draft genome of hulless barley has been sequenced, the assembly remains fragmented. Here, we reported an improved high-quality assembly and annotation of the Tibetan hulless barley genome using more than 67X PacBio long-reads. The N50 contig length of the new assembly is at least more than 19 times larger than other available barley assemblies. The new genome assembly also showed high gene completeness and high collinearity of genome synteny with the previously reported barley genome. The new genome assembly and annotation will not only remove major hurdles in genetic analysis and breeding of hulless barley, but will also serve as a key resource for studying barley genomics and genetics.
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spelling pubmed-72108912020-05-14 An improved high-quality genome assembly and annotation of Tibetan hulless barley Zeng, Xingquan Xu, Tong Ling, Zhihao Wang, Yulin Li, Xiangfeng Xu, Shuqing Xu, Qijun Zha, Sang Qimei, Wangmu Basang, Yuzhen Dunzhu, Jiabu Yu, Mingzhai Yuan, Hongjun Nyima, Tashi Sci Data Data Descriptor Hulless barley (Hordeum vulgare L. var. nudum) is a barley variety that has loose husk cover of the caryopses. Because of the ease in processing and edibility, hulless barley has been locally cultivated and used as human food. For example, in Tibetan Plateau, hulless barley is the staple food for human and essential livestock feed. Although the draft genome of hulless barley has been sequenced, the assembly remains fragmented. Here, we reported an improved high-quality assembly and annotation of the Tibetan hulless barley genome using more than 67X PacBio long-reads. The N50 contig length of the new assembly is at least more than 19 times larger than other available barley assemblies. The new genome assembly also showed high gene completeness and high collinearity of genome synteny with the previously reported barley genome. The new genome assembly and annotation will not only remove major hurdles in genetic analysis and breeding of hulless barley, but will also serve as a key resource for studying barley genomics and genetics. Nature Publishing Group UK 2020-05-08 /pmc/articles/PMC7210891/ /pubmed/32385314 http://dx.doi.org/10.1038/s41597-020-0480-0 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Zeng, Xingquan
Xu, Tong
Ling, Zhihao
Wang, Yulin
Li, Xiangfeng
Xu, Shuqing
Xu, Qijun
Zha, Sang
Qimei, Wangmu
Basang, Yuzhen
Dunzhu, Jiabu
Yu, Mingzhai
Yuan, Hongjun
Nyima, Tashi
An improved high-quality genome assembly and annotation of Tibetan hulless barley
title An improved high-quality genome assembly and annotation of Tibetan hulless barley
title_full An improved high-quality genome assembly and annotation of Tibetan hulless barley
title_fullStr An improved high-quality genome assembly and annotation of Tibetan hulless barley
title_full_unstemmed An improved high-quality genome assembly and annotation of Tibetan hulless barley
title_short An improved high-quality genome assembly and annotation of Tibetan hulless barley
title_sort improved high-quality genome assembly and annotation of tibetan hulless barley
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7210891/
https://www.ncbi.nlm.nih.gov/pubmed/32385314
http://dx.doi.org/10.1038/s41597-020-0480-0
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