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A novel high-dimensional NMR experiment for resolving protein backbone dihedral angle ambiguities

Intrinsically disordered proteins (IDPs) are challenging established structural biology perception and urge a reassessment of the conventional understanding of the subtle interplay between protein structure and dynamics. Due to their importance in eukaryotic life and central role in protein interact...

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Autores principales: Kauffmann, Clemens, Kazimierczuk, Krzysztof, Schwarz, Thomas C., Konrat, Robert, Zawadzka-Kazimierczuk, Anna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7211790/
https://www.ncbi.nlm.nih.gov/pubmed/32239382
http://dx.doi.org/10.1007/s10858-020-00308-y
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author Kauffmann, Clemens
Kazimierczuk, Krzysztof
Schwarz, Thomas C.
Konrat, Robert
Zawadzka-Kazimierczuk, Anna
author_facet Kauffmann, Clemens
Kazimierczuk, Krzysztof
Schwarz, Thomas C.
Konrat, Robert
Zawadzka-Kazimierczuk, Anna
author_sort Kauffmann, Clemens
collection PubMed
description Intrinsically disordered proteins (IDPs) are challenging established structural biology perception and urge a reassessment of the conventional understanding of the subtle interplay between protein structure and dynamics. Due to their importance in eukaryotic life and central role in protein interaction networks, IDP research is a fascinating and highly relevant research area in which NMR spectroscopy is destined to be a key player. The flexible nature of IDPs, as a result of the sampling of a vast conformational space, however, poses a tremendous scientific challenge, both technically and theoretically. Pronounced signal averaging results in narrow signal dispersion and requires higher dimensionality NMR techniques. Moreover, a fundamental problem in the structural characterization of IDPs is the definition of the conformational ensemble sampled by the polypeptide chain in solution, where often the interpretation relies on the concept of ‘residual structure’ or ‘conformational preference’. An important source of structural information is information-rich NMR experiments that probe protein backbone dihedral angles in a unique manner. Cross-correlated relaxation experiments have proven to fulfil this task as they provide unique information about protein backbones, particularly in IDPs. Here we present a novel cross-correlation experiment that utilizes non-uniform sampling detection schemes to resolve protein backbone dihedral ambiguities in IDPs. The sensitivity of this novel technique is illustrated with an application to the prototypical IDP [Formula: see text] -Synculein for which unexpected deviations from random-coil-like behaviour could be observed.
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spelling pubmed-72117902020-05-13 A novel high-dimensional NMR experiment for resolving protein backbone dihedral angle ambiguities Kauffmann, Clemens Kazimierczuk, Krzysztof Schwarz, Thomas C. Konrat, Robert Zawadzka-Kazimierczuk, Anna J Biomol NMR Article Intrinsically disordered proteins (IDPs) are challenging established structural biology perception and urge a reassessment of the conventional understanding of the subtle interplay between protein structure and dynamics. Due to their importance in eukaryotic life and central role in protein interaction networks, IDP research is a fascinating and highly relevant research area in which NMR spectroscopy is destined to be a key player. The flexible nature of IDPs, as a result of the sampling of a vast conformational space, however, poses a tremendous scientific challenge, both technically and theoretically. Pronounced signal averaging results in narrow signal dispersion and requires higher dimensionality NMR techniques. Moreover, a fundamental problem in the structural characterization of IDPs is the definition of the conformational ensemble sampled by the polypeptide chain in solution, where often the interpretation relies on the concept of ‘residual structure’ or ‘conformational preference’. An important source of structural information is information-rich NMR experiments that probe protein backbone dihedral angles in a unique manner. Cross-correlated relaxation experiments have proven to fulfil this task as they provide unique information about protein backbones, particularly in IDPs. Here we present a novel cross-correlation experiment that utilizes non-uniform sampling detection schemes to resolve protein backbone dihedral ambiguities in IDPs. The sensitivity of this novel technique is illustrated with an application to the prototypical IDP [Formula: see text] -Synculein for which unexpected deviations from random-coil-like behaviour could be observed. Springer Netherlands 2020-04-01 2020 /pmc/articles/PMC7211790/ /pubmed/32239382 http://dx.doi.org/10.1007/s10858-020-00308-y Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kauffmann, Clemens
Kazimierczuk, Krzysztof
Schwarz, Thomas C.
Konrat, Robert
Zawadzka-Kazimierczuk, Anna
A novel high-dimensional NMR experiment for resolving protein backbone dihedral angle ambiguities
title A novel high-dimensional NMR experiment for resolving protein backbone dihedral angle ambiguities
title_full A novel high-dimensional NMR experiment for resolving protein backbone dihedral angle ambiguities
title_fullStr A novel high-dimensional NMR experiment for resolving protein backbone dihedral angle ambiguities
title_full_unstemmed A novel high-dimensional NMR experiment for resolving protein backbone dihedral angle ambiguities
title_short A novel high-dimensional NMR experiment for resolving protein backbone dihedral angle ambiguities
title_sort novel high-dimensional nmr experiment for resolving protein backbone dihedral angle ambiguities
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7211790/
https://www.ncbi.nlm.nih.gov/pubmed/32239382
http://dx.doi.org/10.1007/s10858-020-00308-y
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