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Biological and statistical interpretation of size-at-age, mixed-effects models of growth
The differences in life-history traits and processes between organisms living in the same or different populations contribute to their ecological and evolutionary dynamics. We developed mixed-effect model formulations of the popular size-at-age von Bertalanffy and Gompertz growth functions to estima...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7211857/ https://www.ncbi.nlm.nih.gov/pubmed/32431890 http://dx.doi.org/10.1098/rsos.192146 |
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author | Vincenzi, Simone Jesensek, Dusan Crivelli, Alain J. |
author_facet | Vincenzi, Simone Jesensek, Dusan Crivelli, Alain J. |
author_sort | Vincenzi, Simone |
collection | PubMed |
description | The differences in life-history traits and processes between organisms living in the same or different populations contribute to their ecological and evolutionary dynamics. We developed mixed-effect model formulations of the popular size-at-age von Bertalanffy and Gompertz growth functions to estimate individual and group variation in body growth, using as a model system four freshwater fish populations, where tagged individuals were sampled for more than 10 years. We used the software Template Model Builder to estimate the parameters of the mixed-effect growth models. Tests on data that were not used to estimate model parameters showed good predictions of individual growth trajectories using the mixed-effects models and starting from one single observation of body size early in life; the best models had R(2) > 0.80 over more than 500 predictions. Estimates of asymptotic size from the Gompertz and von Bertalanffy models were not significantly correlated, but their predictions of size-at-age of individuals were strongly correlated (r > 0.99), which suggests that choosing between the best models of the two growth functions would have negligible effects on the predictions of size-at-age of individuals. Model results pointed to size ranks that are largely maintained throughout the lifetime of individuals in all populations. |
format | Online Article Text |
id | pubmed-7211857 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-72118572020-05-19 Biological and statistical interpretation of size-at-age, mixed-effects models of growth Vincenzi, Simone Jesensek, Dusan Crivelli, Alain J. R Soc Open Sci Ecology, Conservation, and Global Change Biology The differences in life-history traits and processes between organisms living in the same or different populations contribute to their ecological and evolutionary dynamics. We developed mixed-effect model formulations of the popular size-at-age von Bertalanffy and Gompertz growth functions to estimate individual and group variation in body growth, using as a model system four freshwater fish populations, where tagged individuals were sampled for more than 10 years. We used the software Template Model Builder to estimate the parameters of the mixed-effect growth models. Tests on data that were not used to estimate model parameters showed good predictions of individual growth trajectories using the mixed-effects models and starting from one single observation of body size early in life; the best models had R(2) > 0.80 over more than 500 predictions. Estimates of asymptotic size from the Gompertz and von Bertalanffy models were not significantly correlated, but their predictions of size-at-age of individuals were strongly correlated (r > 0.99), which suggests that choosing between the best models of the two growth functions would have negligible effects on the predictions of size-at-age of individuals. Model results pointed to size ranks that are largely maintained throughout the lifetime of individuals in all populations. The Royal Society 2020-04-08 /pmc/articles/PMC7211857/ /pubmed/32431890 http://dx.doi.org/10.1098/rsos.192146 Text en © 2020 The Authors. http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Ecology, Conservation, and Global Change Biology Vincenzi, Simone Jesensek, Dusan Crivelli, Alain J. Biological and statistical interpretation of size-at-age, mixed-effects models of growth |
title | Biological and statistical interpretation of size-at-age, mixed-effects models of growth |
title_full | Biological and statistical interpretation of size-at-age, mixed-effects models of growth |
title_fullStr | Biological and statistical interpretation of size-at-age, mixed-effects models of growth |
title_full_unstemmed | Biological and statistical interpretation of size-at-age, mixed-effects models of growth |
title_short | Biological and statistical interpretation of size-at-age, mixed-effects models of growth |
title_sort | biological and statistical interpretation of size-at-age, mixed-effects models of growth |
topic | Ecology, Conservation, and Global Change Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7211857/ https://www.ncbi.nlm.nih.gov/pubmed/32431890 http://dx.doi.org/10.1098/rsos.192146 |
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