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A Fast and Automatic Method for Leaf Vein Network Extraction and Vein Density Measurement Based on Object-Oriented Classification

Rapidly determining leaf vein network patterns and vein densities is biologically important and technically challenging. Current methods, however, are limited to vein contour extraction. Further image processing is difficult, and some leaf vein traits of interest therefore cannot be quantified. In t...

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Autores principales: Zhu, Jiyou, Yao, Jiangming, Yu, Qiang, He, Weijun, Xu, Chengyang, Qin, Guoming, Zhu, Qiuyu, Fan, Dayong, Zhu, Hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7214732/
https://www.ncbi.nlm.nih.gov/pubmed/32431721
http://dx.doi.org/10.3389/fpls.2020.00499
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author Zhu, Jiyou
Yao, Jiangming
Yu, Qiang
He, Weijun
Xu, Chengyang
Qin, Guoming
Zhu, Qiuyu
Fan, Dayong
Zhu, Hua
author_facet Zhu, Jiyou
Yao, Jiangming
Yu, Qiang
He, Weijun
Xu, Chengyang
Qin, Guoming
Zhu, Qiuyu
Fan, Dayong
Zhu, Hua
author_sort Zhu, Jiyou
collection PubMed
description Rapidly determining leaf vein network patterns and vein densities is biologically important and technically challenging. Current methods, however, are limited to vein contour extraction. Further image processing is difficult, and some leaf vein traits of interest therefore cannot be quantified. In this study, we proposed a novel method for the fast and accurate determination of leaf vein network patterns and vein density. Nine tree species with different leaf characteristics and vein types were applied to verify this method. To overcome the image processing difficulties at the microscopic scale, we adopted the remote object-oriented classification method applied comprehensively in the field of remote sensing research. The key to this approach is to determine the universally applicable leaf vein extraction threshold values (scale parameter, shape parameter, compactness parameter, brightness feature, spectral feature and geometric feature). Based on our analysis, the following recommended threshold values were determined: the scale parameter was 250, the shape parameter was 0.7, the compactness parameter was 0.3, the brightness feature value was 230∼280, the spectral feature value was 180∼230, and the geometric feature value was less than 2. With the optimal extraction parameters applied, the extraction precision was above 96.40% on average for the nine species studied. The leaf vein density calculation rate increased by more than 87.3% compared to that of the traditional methods. The results showed that this method is accurate, fast, flexible and complementary to existing technologies. It is an effective tool for the fast extraction of vein networks and the exploration of leaf vein characteristics, particularly for large-scale studies in plant vein physiology.
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spelling pubmed-72147322020-05-19 A Fast and Automatic Method for Leaf Vein Network Extraction and Vein Density Measurement Based on Object-Oriented Classification Zhu, Jiyou Yao, Jiangming Yu, Qiang He, Weijun Xu, Chengyang Qin, Guoming Zhu, Qiuyu Fan, Dayong Zhu, Hua Front Plant Sci Plant Science Rapidly determining leaf vein network patterns and vein densities is biologically important and technically challenging. Current methods, however, are limited to vein contour extraction. Further image processing is difficult, and some leaf vein traits of interest therefore cannot be quantified. In this study, we proposed a novel method for the fast and accurate determination of leaf vein network patterns and vein density. Nine tree species with different leaf characteristics and vein types were applied to verify this method. To overcome the image processing difficulties at the microscopic scale, we adopted the remote object-oriented classification method applied comprehensively in the field of remote sensing research. The key to this approach is to determine the universally applicable leaf vein extraction threshold values (scale parameter, shape parameter, compactness parameter, brightness feature, spectral feature and geometric feature). Based on our analysis, the following recommended threshold values were determined: the scale parameter was 250, the shape parameter was 0.7, the compactness parameter was 0.3, the brightness feature value was 230∼280, the spectral feature value was 180∼230, and the geometric feature value was less than 2. With the optimal extraction parameters applied, the extraction precision was above 96.40% on average for the nine species studied. The leaf vein density calculation rate increased by more than 87.3% compared to that of the traditional methods. The results showed that this method is accurate, fast, flexible and complementary to existing technologies. It is an effective tool for the fast extraction of vein networks and the exploration of leaf vein characteristics, particularly for large-scale studies in plant vein physiology. Frontiers Media S.A. 2020-05-05 /pmc/articles/PMC7214732/ /pubmed/32431721 http://dx.doi.org/10.3389/fpls.2020.00499 Text en Copyright © 2020 Zhu, Yao, Yu, He, Xu, Qin, Zhu, Fan and Zhu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Zhu, Jiyou
Yao, Jiangming
Yu, Qiang
He, Weijun
Xu, Chengyang
Qin, Guoming
Zhu, Qiuyu
Fan, Dayong
Zhu, Hua
A Fast and Automatic Method for Leaf Vein Network Extraction and Vein Density Measurement Based on Object-Oriented Classification
title A Fast and Automatic Method for Leaf Vein Network Extraction and Vein Density Measurement Based on Object-Oriented Classification
title_full A Fast and Automatic Method for Leaf Vein Network Extraction and Vein Density Measurement Based on Object-Oriented Classification
title_fullStr A Fast and Automatic Method for Leaf Vein Network Extraction and Vein Density Measurement Based on Object-Oriented Classification
title_full_unstemmed A Fast and Automatic Method for Leaf Vein Network Extraction and Vein Density Measurement Based on Object-Oriented Classification
title_short A Fast and Automatic Method for Leaf Vein Network Extraction and Vein Density Measurement Based on Object-Oriented Classification
title_sort fast and automatic method for leaf vein network extraction and vein density measurement based on object-oriented classification
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7214732/
https://www.ncbi.nlm.nih.gov/pubmed/32431721
http://dx.doi.org/10.3389/fpls.2020.00499
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