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Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis
Pancreatic cancer represents one of the most lethal disease worldwide but still orphan of a molecularly driven therapeutic approach, although many genomic and transcriptomic classifications have been proposed over the years. Clinical heterogeneity is a hallmark of this disease, as different patients...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7215357/ https://www.ncbi.nlm.nih.gov/pubmed/32316602 http://dx.doi.org/10.3390/ijms21082814 |
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author | Pompella, Luca Tirino, Giuseppe Pappalardo, Annalisa Caterino, Marianna Ventriglia, Anna Nacca, Valeria Orditura, Michele Ciardiello, Fortunato De Vita, Ferdinando |
author_facet | Pompella, Luca Tirino, Giuseppe Pappalardo, Annalisa Caterino, Marianna Ventriglia, Anna Nacca, Valeria Orditura, Michele Ciardiello, Fortunato De Vita, Ferdinando |
author_sort | Pompella, Luca |
collection | PubMed |
description | Pancreatic cancer represents one of the most lethal disease worldwide but still orphan of a molecularly driven therapeutic approach, although many genomic and transcriptomic classifications have been proposed over the years. Clinical heterogeneity is a hallmark of this disease, as different patients show different responses to the same therapeutic regimens. However, genomic analyses revealed quite a homogeneous disease picture, with very common mutations in four genes only (KRAS, TP53, CDKN2A, and SMAD4) and a long tail of other mutated genes, with doubtful pathogenic meaning. Even bulk transcriptomic classifications could not resolve this great heterogeneity, as many informations related to small cell populations within cancer tissue could be lost. At the same time, single cell analysis has emerged as a powerful tool to dissect intratumoral heterogeneity like never before, with possibility of generating a new disease taxonomy at unprecedented molecular resolution. In this review, we summarize the most relevant genomic, bulk and single-cell transcriptomic classifications of pancreatic cancer, and try to understand how novel technologies, like single cell analysis, could lead to novel therapeutic strategies for this highly lethal disease. |
format | Online Article Text |
id | pubmed-7215357 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-72153572020-05-18 Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis Pompella, Luca Tirino, Giuseppe Pappalardo, Annalisa Caterino, Marianna Ventriglia, Anna Nacca, Valeria Orditura, Michele Ciardiello, Fortunato De Vita, Ferdinando Int J Mol Sci Review Pancreatic cancer represents one of the most lethal disease worldwide but still orphan of a molecularly driven therapeutic approach, although many genomic and transcriptomic classifications have been proposed over the years. Clinical heterogeneity is a hallmark of this disease, as different patients show different responses to the same therapeutic regimens. However, genomic analyses revealed quite a homogeneous disease picture, with very common mutations in four genes only (KRAS, TP53, CDKN2A, and SMAD4) and a long tail of other mutated genes, with doubtful pathogenic meaning. Even bulk transcriptomic classifications could not resolve this great heterogeneity, as many informations related to small cell populations within cancer tissue could be lost. At the same time, single cell analysis has emerged as a powerful tool to dissect intratumoral heterogeneity like never before, with possibility of generating a new disease taxonomy at unprecedented molecular resolution. In this review, we summarize the most relevant genomic, bulk and single-cell transcriptomic classifications of pancreatic cancer, and try to understand how novel technologies, like single cell analysis, could lead to novel therapeutic strategies for this highly lethal disease. MDPI 2020-04-17 /pmc/articles/PMC7215357/ /pubmed/32316602 http://dx.doi.org/10.3390/ijms21082814 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Pompella, Luca Tirino, Giuseppe Pappalardo, Annalisa Caterino, Marianna Ventriglia, Anna Nacca, Valeria Orditura, Michele Ciardiello, Fortunato De Vita, Ferdinando Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis |
title | Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis |
title_full | Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis |
title_fullStr | Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis |
title_full_unstemmed | Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis |
title_short | Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis |
title_sort | pancreatic cancer molecular classifications: from bulk genomics to single cell analysis |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7215357/ https://www.ncbi.nlm.nih.gov/pubmed/32316602 http://dx.doi.org/10.3390/ijms21082814 |
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