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Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis

Pancreatic cancer represents one of the most lethal disease worldwide but still orphan of a molecularly driven therapeutic approach, although many genomic and transcriptomic classifications have been proposed over the years. Clinical heterogeneity is a hallmark of this disease, as different patients...

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Autores principales: Pompella, Luca, Tirino, Giuseppe, Pappalardo, Annalisa, Caterino, Marianna, Ventriglia, Anna, Nacca, Valeria, Orditura, Michele, Ciardiello, Fortunato, De Vita, Ferdinando
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7215357/
https://www.ncbi.nlm.nih.gov/pubmed/32316602
http://dx.doi.org/10.3390/ijms21082814
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author Pompella, Luca
Tirino, Giuseppe
Pappalardo, Annalisa
Caterino, Marianna
Ventriglia, Anna
Nacca, Valeria
Orditura, Michele
Ciardiello, Fortunato
De Vita, Ferdinando
author_facet Pompella, Luca
Tirino, Giuseppe
Pappalardo, Annalisa
Caterino, Marianna
Ventriglia, Anna
Nacca, Valeria
Orditura, Michele
Ciardiello, Fortunato
De Vita, Ferdinando
author_sort Pompella, Luca
collection PubMed
description Pancreatic cancer represents one of the most lethal disease worldwide but still orphan of a molecularly driven therapeutic approach, although many genomic and transcriptomic classifications have been proposed over the years. Clinical heterogeneity is a hallmark of this disease, as different patients show different responses to the same therapeutic regimens. However, genomic analyses revealed quite a homogeneous disease picture, with very common mutations in four genes only (KRAS, TP53, CDKN2A, and SMAD4) and a long tail of other mutated genes, with doubtful pathogenic meaning. Even bulk transcriptomic classifications could not resolve this great heterogeneity, as many informations related to small cell populations within cancer tissue could be lost. At the same time, single cell analysis has emerged as a powerful tool to dissect intratumoral heterogeneity like never before, with possibility of generating a new disease taxonomy at unprecedented molecular resolution. In this review, we summarize the most relevant genomic, bulk and single-cell transcriptomic classifications of pancreatic cancer, and try to understand how novel technologies, like single cell analysis, could lead to novel therapeutic strategies for this highly lethal disease.
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spelling pubmed-72153572020-05-18 Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis Pompella, Luca Tirino, Giuseppe Pappalardo, Annalisa Caterino, Marianna Ventriglia, Anna Nacca, Valeria Orditura, Michele Ciardiello, Fortunato De Vita, Ferdinando Int J Mol Sci Review Pancreatic cancer represents one of the most lethal disease worldwide but still orphan of a molecularly driven therapeutic approach, although many genomic and transcriptomic classifications have been proposed over the years. Clinical heterogeneity is a hallmark of this disease, as different patients show different responses to the same therapeutic regimens. However, genomic analyses revealed quite a homogeneous disease picture, with very common mutations in four genes only (KRAS, TP53, CDKN2A, and SMAD4) and a long tail of other mutated genes, with doubtful pathogenic meaning. Even bulk transcriptomic classifications could not resolve this great heterogeneity, as many informations related to small cell populations within cancer tissue could be lost. At the same time, single cell analysis has emerged as a powerful tool to dissect intratumoral heterogeneity like never before, with possibility of generating a new disease taxonomy at unprecedented molecular resolution. In this review, we summarize the most relevant genomic, bulk and single-cell transcriptomic classifications of pancreatic cancer, and try to understand how novel technologies, like single cell analysis, could lead to novel therapeutic strategies for this highly lethal disease. MDPI 2020-04-17 /pmc/articles/PMC7215357/ /pubmed/32316602 http://dx.doi.org/10.3390/ijms21082814 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Pompella, Luca
Tirino, Giuseppe
Pappalardo, Annalisa
Caterino, Marianna
Ventriglia, Anna
Nacca, Valeria
Orditura, Michele
Ciardiello, Fortunato
De Vita, Ferdinando
Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis
title Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis
title_full Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis
title_fullStr Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis
title_full_unstemmed Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis
title_short Pancreatic Cancer Molecular Classifications: From Bulk Genomics to Single Cell Analysis
title_sort pancreatic cancer molecular classifications: from bulk genomics to single cell analysis
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7215357/
https://www.ncbi.nlm.nih.gov/pubmed/32316602
http://dx.doi.org/10.3390/ijms21082814
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