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neurotic: Neuroscience Tool for Interactive Characterization

A software tool for synchronization of video with signals would be of broad general use to behavioral neuroscientists. A new program, called neurotic (NEUROscience Tool for Interactive Characterization), allows users to review and annotate signal data synchronized with video, performs simple initial...

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Detalles Bibliográficos
Autores principales: Gill, Jeffrey P., Garcia, Samuel, Ting, Lena H., Wu, Mengnan, Chiel, Hillel J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society for Neuroscience 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7215586/
https://www.ncbi.nlm.nih.gov/pubmed/32332078
http://dx.doi.org/10.1523/ENEURO.0085-20.2020
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author Gill, Jeffrey P.
Garcia, Samuel
Ting, Lena H.
Wu, Mengnan
Chiel, Hillel J.
author_facet Gill, Jeffrey P.
Garcia, Samuel
Ting, Lena H.
Wu, Mengnan
Chiel, Hillel J.
author_sort Gill, Jeffrey P.
collection PubMed
description A software tool for synchronization of video with signals would be of broad general use to behavioral neuroscientists. A new program, called neurotic (NEUROscience Tool for Interactive Characterization), allows users to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, is easy to use, and supports a variety of file formats. The program also facilitates collaborations by using a portable specification for loading and processing data and retrieving data files from online sources. Two examples are shown in which the software is used to explore experimental datasets with extracellular nerve or muscle recordings and simultaneous video of behavior. The configuration specification for controlling how data are located, loaded, processed, and plotted is also summarized. Algorithms for spike detection and burst detection are demonstrated. This new program could be used in many applications in which behavior and signals need to be analyzed together.
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spelling pubmed-72155862020-05-12 neurotic: Neuroscience Tool for Interactive Characterization Gill, Jeffrey P. Garcia, Samuel Ting, Lena H. Wu, Mengnan Chiel, Hillel J. eNeuro Open Source Tools and Methods A software tool for synchronization of video with signals would be of broad general use to behavioral neuroscientists. A new program, called neurotic (NEUROscience Tool for Interactive Characterization), allows users to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, is easy to use, and supports a variety of file formats. The program also facilitates collaborations by using a portable specification for loading and processing data and retrieving data files from online sources. Two examples are shown in which the software is used to explore experimental datasets with extracellular nerve or muscle recordings and simultaneous video of behavior. The configuration specification for controlling how data are located, loaded, processed, and plotted is also summarized. Algorithms for spike detection and burst detection are demonstrated. This new program could be used in many applications in which behavior and signals need to be analyzed together. Society for Neuroscience 2020-05-11 /pmc/articles/PMC7215586/ /pubmed/32332078 http://dx.doi.org/10.1523/ENEURO.0085-20.2020 Text en Copyright © 2020 Gill et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.
spellingShingle Open Source Tools and Methods
Gill, Jeffrey P.
Garcia, Samuel
Ting, Lena H.
Wu, Mengnan
Chiel, Hillel J.
neurotic: Neuroscience Tool for Interactive Characterization
title neurotic: Neuroscience Tool for Interactive Characterization
title_full neurotic: Neuroscience Tool for Interactive Characterization
title_fullStr neurotic: Neuroscience Tool for Interactive Characterization
title_full_unstemmed neurotic: Neuroscience Tool for Interactive Characterization
title_short neurotic: Neuroscience Tool for Interactive Characterization
title_sort neurotic: neuroscience tool for interactive characterization
topic Open Source Tools and Methods
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7215586/
https://www.ncbi.nlm.nih.gov/pubmed/32332078
http://dx.doi.org/10.1523/ENEURO.0085-20.2020
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