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neurotic: Neuroscience Tool for Interactive Characterization
A software tool for synchronization of video with signals would be of broad general use to behavioral neuroscientists. A new program, called neurotic (NEUROscience Tool for Interactive Characterization), allows users to review and annotate signal data synchronized with video, performs simple initial...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society for Neuroscience
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7215586/ https://www.ncbi.nlm.nih.gov/pubmed/32332078 http://dx.doi.org/10.1523/ENEURO.0085-20.2020 |
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author | Gill, Jeffrey P. Garcia, Samuel Ting, Lena H. Wu, Mengnan Chiel, Hillel J. |
author_facet | Gill, Jeffrey P. Garcia, Samuel Ting, Lena H. Wu, Mengnan Chiel, Hillel J. |
author_sort | Gill, Jeffrey P. |
collection | PubMed |
description | A software tool for synchronization of video with signals would be of broad general use to behavioral neuroscientists. A new program, called neurotic (NEUROscience Tool for Interactive Characterization), allows users to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, is easy to use, and supports a variety of file formats. The program also facilitates collaborations by using a portable specification for loading and processing data and retrieving data files from online sources. Two examples are shown in which the software is used to explore experimental datasets with extracellular nerve or muscle recordings and simultaneous video of behavior. The configuration specification for controlling how data are located, loaded, processed, and plotted is also summarized. Algorithms for spike detection and burst detection are demonstrated. This new program could be used in many applications in which behavior and signals need to be analyzed together. |
format | Online Article Text |
id | pubmed-7215586 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Society for Neuroscience |
record_format | MEDLINE/PubMed |
spelling | pubmed-72155862020-05-12 neurotic: Neuroscience Tool for Interactive Characterization Gill, Jeffrey P. Garcia, Samuel Ting, Lena H. Wu, Mengnan Chiel, Hillel J. eNeuro Open Source Tools and Methods A software tool for synchronization of video with signals would be of broad general use to behavioral neuroscientists. A new program, called neurotic (NEUROscience Tool for Interactive Characterization), allows users to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, is easy to use, and supports a variety of file formats. The program also facilitates collaborations by using a portable specification for loading and processing data and retrieving data files from online sources. Two examples are shown in which the software is used to explore experimental datasets with extracellular nerve or muscle recordings and simultaneous video of behavior. The configuration specification for controlling how data are located, loaded, processed, and plotted is also summarized. Algorithms for spike detection and burst detection are demonstrated. This new program could be used in many applications in which behavior and signals need to be analyzed together. Society for Neuroscience 2020-05-11 /pmc/articles/PMC7215586/ /pubmed/32332078 http://dx.doi.org/10.1523/ENEURO.0085-20.2020 Text en Copyright © 2020 Gill et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. |
spellingShingle | Open Source Tools and Methods Gill, Jeffrey P. Garcia, Samuel Ting, Lena H. Wu, Mengnan Chiel, Hillel J. neurotic: Neuroscience Tool for Interactive Characterization |
title | neurotic: Neuroscience Tool for Interactive Characterization |
title_full | neurotic: Neuroscience Tool for Interactive Characterization |
title_fullStr | neurotic: Neuroscience Tool for Interactive Characterization |
title_full_unstemmed | neurotic: Neuroscience Tool for Interactive Characterization |
title_short | neurotic: Neuroscience Tool for Interactive Characterization |
title_sort | neurotic: neuroscience tool for interactive characterization |
topic | Open Source Tools and Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7215586/ https://www.ncbi.nlm.nih.gov/pubmed/32332078 http://dx.doi.org/10.1523/ENEURO.0085-20.2020 |
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