Cargando…
DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models
BACKGROUND: RNAseq is nowadays the method of choice for transcriptome analysis. In the last decades, a high number of statistical methods, and associated bioinformatics tools, for RNAseq analysis were developed. More recently, statistical studies realised neutral comparison studies using benchmark d...
Autores principales: | Lambert, Ilana, Paysant-Le Roux, Christine, Colella, Stefano, Martin-Magniette, Marie-Laure |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7216733/ https://www.ncbi.nlm.nih.gov/pubmed/32426025 http://dx.doi.org/10.1186/s13007-020-00611-7 |
Ejemplares similares
-
Arkas: Rapid reproducible RNAseq analysis
por: Colombo, Anthony R., et al.
Publicado: (2017) -
RNASeqBrowser: A genome browser for simultaneous visualization of raw strand specific RNAseq reads and UCSC genome browser custom tracks
por: An, Jiyuan, et al.
Publicado: (2015) -
CoXpress: differential co-expression in gene expression data
por: Watson, Michael
Publicado: (2006) -
csdR, an R package for differential co-expression analysis
por: Pettersen, Jakob P., et al.
Publicado: (2022) -
MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates
por: Bérard, Caroline, et al.
Publicado: (2013)