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Limitations of discrete-time approaches to continuous-time contagion dynamics
Continuous-time Markov process models of contagions are widely studied, not least because of their utility in predicting the evolution of real-world contagions and in formulating control measures. It is often the case, however, that discrete-time approaches are employed to analyze such models or to...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Physical Society
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7217503/ https://www.ncbi.nlm.nih.gov/pubmed/27967171 http://dx.doi.org/10.1103/PhysRevE.94.052125 |
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author | Fennell, Peter G. Melnik, Sergey Gleeson, James P. |
author_facet | Fennell, Peter G. Melnik, Sergey Gleeson, James P. |
author_sort | Fennell, Peter G. |
collection | PubMed |
description | Continuous-time Markov process models of contagions are widely studied, not least because of their utility in predicting the evolution of real-world contagions and in formulating control measures. It is often the case, however, that discrete-time approaches are employed to analyze such models or to simulate them numerically. In such cases, time is discretized into uniform steps and transition rates between states are replaced by transition probabilities. In this paper, we illustrate potential limitations to this approach. We show how discretizing time leads to a restriction on the values of the model parameters that can accurately be studied. We examine numerical simulation schemes employed in the literature, showing how synchronous-type updating schemes can bias discrete-time formalisms when compared against continuous-time formalisms. Event-based simulations, such as the Gillespie algorithm, are proposed as optimal simulation schemes both in terms of replicating the continuous-time process and computational speed. Finally, we show how discretizing time can affect the value of the epidemic threshold for large values of the infection rate and the recovery rate, even if the ratio between the former and the latter is small. |
format | Online Article Text |
id | pubmed-7217503 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | American Physical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-72175032020-05-13 Limitations of discrete-time approaches to continuous-time contagion dynamics Fennell, Peter G. Melnik, Sergey Gleeson, James P. Phys Rev E Articles Continuous-time Markov process models of contagions are widely studied, not least because of their utility in predicting the evolution of real-world contagions and in formulating control measures. It is often the case, however, that discrete-time approaches are employed to analyze such models or to simulate them numerically. In such cases, time is discretized into uniform steps and transition rates between states are replaced by transition probabilities. In this paper, we illustrate potential limitations to this approach. We show how discretizing time leads to a restriction on the values of the model parameters that can accurately be studied. We examine numerical simulation schemes employed in the literature, showing how synchronous-type updating schemes can bias discrete-time formalisms when compared against continuous-time formalisms. Event-based simulations, such as the Gillespie algorithm, are proposed as optimal simulation schemes both in terms of replicating the continuous-time process and computational speed. Finally, we show how discretizing time can affect the value of the epidemic threshold for large values of the infection rate and the recovery rate, even if the ratio between the former and the latter is small. American Physical Society 2016-11 2016-11-16 /pmc/articles/PMC7217503/ /pubmed/27967171 http://dx.doi.org/10.1103/PhysRevE.94.052125 Text en ©2016 American Physical Society This article is made available via the PMC Open Access Subset for unrestricted re-use and analyses in any form or by any means with acknowledgement of the original source. |
spellingShingle | Articles Fennell, Peter G. Melnik, Sergey Gleeson, James P. Limitations of discrete-time approaches to continuous-time contagion dynamics |
title | Limitations of discrete-time approaches to continuous-time contagion dynamics |
title_full | Limitations of discrete-time approaches to continuous-time contagion dynamics |
title_fullStr | Limitations of discrete-time approaches to continuous-time contagion dynamics |
title_full_unstemmed | Limitations of discrete-time approaches to continuous-time contagion dynamics |
title_short | Limitations of discrete-time approaches to continuous-time contagion dynamics |
title_sort | limitations of discrete-time approaches to continuous-time contagion dynamics |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7217503/ https://www.ncbi.nlm.nih.gov/pubmed/27967171 http://dx.doi.org/10.1103/PhysRevE.94.052125 |
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