Cargando…
Sampling methods for the quasistationary regime of epidemic processes on regular and complex networks
A major hurdle in the simulation of the steady state of epidemic processes is that the system will unavoidably visit an absorbing, disease-free state at sufficiently long times due to the finite size of the networks where epidemics evolves. In the present work, we compare different quasistationary (...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Physical Society
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7217511/ https://www.ncbi.nlm.nih.gov/pubmed/27841497 http://dx.doi.org/10.1103/PhysRevE.94.042308 |
_version_ | 1783532614287622144 |
---|---|
author | Sander, Renan S. Costa, Guilherme S. Ferreira, Silvio C. |
author_facet | Sander, Renan S. Costa, Guilherme S. Ferreira, Silvio C. |
author_sort | Sander, Renan S. |
collection | PubMed |
description | A major hurdle in the simulation of the steady state of epidemic processes is that the system will unavoidably visit an absorbing, disease-free state at sufficiently long times due to the finite size of the networks where epidemics evolves. In the present work, we compare different quasistationary (QS) simulation methods where the absorbing states are suitably handled and the thermodynamical limit of the original dynamics can be achieved. We analyze the standard QS (SQS) method, where the sampling is constrained to active configurations, the reflecting boundary condition (RBC), where the dynamics returns to the pre-absorbing configuration, and hub reactivation (HR), where the most connected vertex of the network is reactivated after a visit to an absorbing state. We apply the methods to the contact process (CP) and susceptible-infected-susceptible (SIS) models on regular and scale free networks. The investigated methods yield the same epidemic threshold for both models. For CP, that undergoes a standard collective phase transition, the methods are equivalent. For SIS, whose phase transition is ruled by the hub mutual reactivation, the SQS and HR methods are able to capture localized epidemic phases while RBC is not. We also apply the autocorrelation time as a tool to characterize the phase transition and observe that this analysis provides the same finite-size scaling exponents for the critical relaxation time for the investigated methods. Finally, we verify the equivalence between RBC method and a weak external field for epidemics on networks. |
format | Online Article Text |
id | pubmed-7217511 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | American Physical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-72175112020-05-13 Sampling methods for the quasistationary regime of epidemic processes on regular and complex networks Sander, Renan S. Costa, Guilherme S. Ferreira, Silvio C. Phys Rev E Articles A major hurdle in the simulation of the steady state of epidemic processes is that the system will unavoidably visit an absorbing, disease-free state at sufficiently long times due to the finite size of the networks where epidemics evolves. In the present work, we compare different quasistationary (QS) simulation methods where the absorbing states are suitably handled and the thermodynamical limit of the original dynamics can be achieved. We analyze the standard QS (SQS) method, where the sampling is constrained to active configurations, the reflecting boundary condition (RBC), where the dynamics returns to the pre-absorbing configuration, and hub reactivation (HR), where the most connected vertex of the network is reactivated after a visit to an absorbing state. We apply the methods to the contact process (CP) and susceptible-infected-susceptible (SIS) models on regular and scale free networks. The investigated methods yield the same epidemic threshold for both models. For CP, that undergoes a standard collective phase transition, the methods are equivalent. For SIS, whose phase transition is ruled by the hub mutual reactivation, the SQS and HR methods are able to capture localized epidemic phases while RBC is not. We also apply the autocorrelation time as a tool to characterize the phase transition and observe that this analysis provides the same finite-size scaling exponents for the critical relaxation time for the investigated methods. Finally, we verify the equivalence between RBC method and a weak external field for epidemics on networks. American Physical Society 2016-10 2016-10-14 /pmc/articles/PMC7217511/ /pubmed/27841497 http://dx.doi.org/10.1103/PhysRevE.94.042308 Text en ©2016 American Physical Society This article is made available via the PMC Open Access Subset for unrestricted re-use and analyses in any form or by any means with acknowledgement of the original source. |
spellingShingle | Articles Sander, Renan S. Costa, Guilherme S. Ferreira, Silvio C. Sampling methods for the quasistationary regime of epidemic processes on regular and complex networks |
title | Sampling methods for the quasistationary regime of epidemic processes on regular and complex networks |
title_full | Sampling methods for the quasistationary regime of epidemic processes on regular and complex networks |
title_fullStr | Sampling methods for the quasistationary regime of epidemic processes on regular and complex networks |
title_full_unstemmed | Sampling methods for the quasistationary regime of epidemic processes on regular and complex networks |
title_short | Sampling methods for the quasistationary regime of epidemic processes on regular and complex networks |
title_sort | sampling methods for the quasistationary regime of epidemic processes on regular and complex networks |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7217511/ https://www.ncbi.nlm.nih.gov/pubmed/27841497 http://dx.doi.org/10.1103/PhysRevE.94.042308 |
work_keys_str_mv | AT sanderrenans samplingmethodsforthequasistationaryregimeofepidemicprocessesonregularandcomplexnetworks AT costaguilhermes samplingmethodsforthequasistationaryregimeofepidemicprocessesonregularandcomplexnetworks AT ferreirasilvioc samplingmethodsforthequasistationaryregimeofepidemicprocessesonregularandcomplexnetworks |