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The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields
The aim of the study was to investigate the usefulness of processing visual field (VF) using a variational autoencoder (VAE). The training data consisted of 82,433 VFs from 16,836 eyes. Testing dataset 1 consisted of test-retest VFs from 104 eyes with open angle glaucoma. Testing dataset 2 was serie...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7217822/ https://www.ncbi.nlm.nih.gov/pubmed/32398783 http://dx.doi.org/10.1038/s41598-020-64869-6 |
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author | Asaoka, Ryo Murata, Hiroshi Asano, Shotaro Matsuura, Masato Fujino, Yuri Miki, Atsuya Tanito, Masaki Mizoue, Shiro Mori, Kazuhiko Suzuki, Katsuyoshi Yamashita, Takehiro Kashiwagi, Kenji Shoji, Nobuyuki |
author_facet | Asaoka, Ryo Murata, Hiroshi Asano, Shotaro Matsuura, Masato Fujino, Yuri Miki, Atsuya Tanito, Masaki Mizoue, Shiro Mori, Kazuhiko Suzuki, Katsuyoshi Yamashita, Takehiro Kashiwagi, Kenji Shoji, Nobuyuki |
author_sort | Asaoka, Ryo |
collection | PubMed |
description | The aim of the study was to investigate the usefulness of processing visual field (VF) using a variational autoencoder (VAE). The training data consisted of 82,433 VFs from 16,836 eyes. Testing dataset 1 consisted of test-retest VFs from 104 eyes with open angle glaucoma. Testing dataset 2 was series of 10 VFs from 638 eyes with open angle glaucoma. A VAE model to reconstruct VF was developed using the training dataset. VFs in the testing dataset 1 were then reconstructed using the trained VAE and the mean total deviation (mTD) was calculated (mTD(VAE)). In testing dataset 2, the mTD value of the tenth VF was predicted using shorter series of VFs. A similar calculation was carried out using a weighted linear regression where the weights were equal to the absolute difference between mTD and mTD(VAE). In testing dataset 1, there was a significant relationship between the difference between mTD and mTD(VAE) from the first VF and the difference between mTD in the first and second VFs. In testing dataset 2, mean squared prediction errors with the weighted mTD trend analysis were significantly smaller than those form the unweighted mTD trend analysis. |
format | Online Article Text |
id | pubmed-7217822 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-72178222020-05-19 The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields Asaoka, Ryo Murata, Hiroshi Asano, Shotaro Matsuura, Masato Fujino, Yuri Miki, Atsuya Tanito, Masaki Mizoue, Shiro Mori, Kazuhiko Suzuki, Katsuyoshi Yamashita, Takehiro Kashiwagi, Kenji Shoji, Nobuyuki Sci Rep Article The aim of the study was to investigate the usefulness of processing visual field (VF) using a variational autoencoder (VAE). The training data consisted of 82,433 VFs from 16,836 eyes. Testing dataset 1 consisted of test-retest VFs from 104 eyes with open angle glaucoma. Testing dataset 2 was series of 10 VFs from 638 eyes with open angle glaucoma. A VAE model to reconstruct VF was developed using the training dataset. VFs in the testing dataset 1 were then reconstructed using the trained VAE and the mean total deviation (mTD) was calculated (mTD(VAE)). In testing dataset 2, the mTD value of the tenth VF was predicted using shorter series of VFs. A similar calculation was carried out using a weighted linear regression where the weights were equal to the absolute difference between mTD and mTD(VAE). In testing dataset 1, there was a significant relationship between the difference between mTD and mTD(VAE) from the first VF and the difference between mTD in the first and second VFs. In testing dataset 2, mean squared prediction errors with the weighted mTD trend analysis were significantly smaller than those form the unweighted mTD trend analysis. Nature Publishing Group UK 2020-05-12 /pmc/articles/PMC7217822/ /pubmed/32398783 http://dx.doi.org/10.1038/s41598-020-64869-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Asaoka, Ryo Murata, Hiroshi Asano, Shotaro Matsuura, Masato Fujino, Yuri Miki, Atsuya Tanito, Masaki Mizoue, Shiro Mori, Kazuhiko Suzuki, Katsuyoshi Yamashita, Takehiro Kashiwagi, Kenji Shoji, Nobuyuki The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields |
title | The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields |
title_full | The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields |
title_fullStr | The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields |
title_full_unstemmed | The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields |
title_short | The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields |
title_sort | usefulness of the deep learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7217822/ https://www.ncbi.nlm.nih.gov/pubmed/32398783 http://dx.doi.org/10.1038/s41598-020-64869-6 |
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