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The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields

The aim of the study was to investigate the usefulness of processing visual field (VF) using a variational autoencoder (VAE). The training data consisted of 82,433 VFs from 16,836 eyes. Testing dataset 1 consisted of test-retest VFs from 104 eyes with open angle glaucoma. Testing dataset 2 was serie...

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Autores principales: Asaoka, Ryo, Murata, Hiroshi, Asano, Shotaro, Matsuura, Masato, Fujino, Yuri, Miki, Atsuya, Tanito, Masaki, Mizoue, Shiro, Mori, Kazuhiko, Suzuki, Katsuyoshi, Yamashita, Takehiro, Kashiwagi, Kenji, Shoji, Nobuyuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7217822/
https://www.ncbi.nlm.nih.gov/pubmed/32398783
http://dx.doi.org/10.1038/s41598-020-64869-6
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author Asaoka, Ryo
Murata, Hiroshi
Asano, Shotaro
Matsuura, Masato
Fujino, Yuri
Miki, Atsuya
Tanito, Masaki
Mizoue, Shiro
Mori, Kazuhiko
Suzuki, Katsuyoshi
Yamashita, Takehiro
Kashiwagi, Kenji
Shoji, Nobuyuki
author_facet Asaoka, Ryo
Murata, Hiroshi
Asano, Shotaro
Matsuura, Masato
Fujino, Yuri
Miki, Atsuya
Tanito, Masaki
Mizoue, Shiro
Mori, Kazuhiko
Suzuki, Katsuyoshi
Yamashita, Takehiro
Kashiwagi, Kenji
Shoji, Nobuyuki
author_sort Asaoka, Ryo
collection PubMed
description The aim of the study was to investigate the usefulness of processing visual field (VF) using a variational autoencoder (VAE). The training data consisted of 82,433 VFs from 16,836 eyes. Testing dataset 1 consisted of test-retest VFs from 104 eyes with open angle glaucoma. Testing dataset 2 was series of 10 VFs from 638 eyes with open angle glaucoma. A VAE model to reconstruct VF was developed using the training dataset. VFs in the testing dataset 1 were then reconstructed using the trained VAE and the mean total deviation (mTD) was calculated (mTD(VAE)). In testing dataset 2, the mTD value of the tenth VF was predicted using shorter series of VFs. A similar calculation was carried out using a weighted linear regression where the weights were equal to the absolute difference between mTD and mTD(VAE). In testing dataset 1, there was a significant relationship between the difference between mTD and mTD(VAE) from the first VF and the difference between mTD in the first and second VFs. In testing dataset 2, mean squared prediction errors with the weighted mTD trend analysis were significantly smaller than those form the unweighted mTD trend analysis.
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spelling pubmed-72178222020-05-19 The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields Asaoka, Ryo Murata, Hiroshi Asano, Shotaro Matsuura, Masato Fujino, Yuri Miki, Atsuya Tanito, Masaki Mizoue, Shiro Mori, Kazuhiko Suzuki, Katsuyoshi Yamashita, Takehiro Kashiwagi, Kenji Shoji, Nobuyuki Sci Rep Article The aim of the study was to investigate the usefulness of processing visual field (VF) using a variational autoencoder (VAE). The training data consisted of 82,433 VFs from 16,836 eyes. Testing dataset 1 consisted of test-retest VFs from 104 eyes with open angle glaucoma. Testing dataset 2 was series of 10 VFs from 638 eyes with open angle glaucoma. A VAE model to reconstruct VF was developed using the training dataset. VFs in the testing dataset 1 were then reconstructed using the trained VAE and the mean total deviation (mTD) was calculated (mTD(VAE)). In testing dataset 2, the mTD value of the tenth VF was predicted using shorter series of VFs. A similar calculation was carried out using a weighted linear regression where the weights were equal to the absolute difference between mTD and mTD(VAE). In testing dataset 1, there was a significant relationship between the difference between mTD and mTD(VAE) from the first VF and the difference between mTD in the first and second VFs. In testing dataset 2, mean squared prediction errors with the weighted mTD trend analysis were significantly smaller than those form the unweighted mTD trend analysis. Nature Publishing Group UK 2020-05-12 /pmc/articles/PMC7217822/ /pubmed/32398783 http://dx.doi.org/10.1038/s41598-020-64869-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Asaoka, Ryo
Murata, Hiroshi
Asano, Shotaro
Matsuura, Masato
Fujino, Yuri
Miki, Atsuya
Tanito, Masaki
Mizoue, Shiro
Mori, Kazuhiko
Suzuki, Katsuyoshi
Yamashita, Takehiro
Kashiwagi, Kenji
Shoji, Nobuyuki
The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields
title The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields
title_full The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields
title_fullStr The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields
title_full_unstemmed The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields
title_short The usefulness of the Deep Learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields
title_sort usefulness of the deep learning method of variational autoencoder to reduce measurement noise in glaucomatous visual fields
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7217822/
https://www.ncbi.nlm.nih.gov/pubmed/32398783
http://dx.doi.org/10.1038/s41598-020-64869-6
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