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Genomic Sequencing Capacity, Data Retention, and Personal Access to Raw Data in Europe

Whole genome/exome sequencing (WGS/WES) has become widely adopted in research and, more recently, in clinical settings. Many hope that the information obtained from the interpretation of these data will have medical benefits for patients and—in some cases—also their biological relatives. Because of...

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Autores principales: Narayanasamy, Shaman, Markina, Varvara, Thorogood, Adrian, Blazkova, Adriana, Shabani, Mahsa, Knoppers, Bartha M., Prainsack, Barbara, Koesters, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7218066/
https://www.ncbi.nlm.nih.gov/pubmed/32435258
http://dx.doi.org/10.3389/fgene.2020.00303
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author Narayanasamy, Shaman
Markina, Varvara
Thorogood, Adrian
Blazkova, Adriana
Shabani, Mahsa
Knoppers, Bartha M.
Prainsack, Barbara
Koesters, Robert
author_facet Narayanasamy, Shaman
Markina, Varvara
Thorogood, Adrian
Blazkova, Adriana
Shabani, Mahsa
Knoppers, Bartha M.
Prainsack, Barbara
Koesters, Robert
author_sort Narayanasamy, Shaman
collection PubMed
description Whole genome/exome sequencing (WGS/WES) has become widely adopted in research and, more recently, in clinical settings. Many hope that the information obtained from the interpretation of these data will have medical benefits for patients and—in some cases—also their biological relatives. Because of the manifold possibilities to reuse genomic data, enabling sequenced individuals to access their own raw (uninterpreted) genomic data is a highly debated issue. This paper reports some of the first empirical findings on personal genome access policies and practices. We interviewed 39 respondents, working at 33 institutions in 21 countries across Europe. These sequencing institutions generate massive amounts of WGS/WES data and represent varying organisational structures and operational models. Taken together, in total, these institutions have sequenced ∼317,259 genomes and exomes to date. Most of the sequencing institutions reported that they are able to store raw genomic data in compliance with various national regulations, although there was a lack of standardisation of storage formats. Interviewees from 12 of the 33 institutions included in our study reported that they had received requests for personal access to raw genomic data from sequenced individuals. In the absence of policies on how to process such requests, these were decided on an ad hoc basis; in the end, at least 28 requests were granted, while there were no reports of requests being rejected. Given the rights, interests, and liabilities at stake, it is essential that sequencing institutions adopt clear policies and processes for raw genomic data retention and personal access.
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spelling pubmed-72180662020-05-20 Genomic Sequencing Capacity, Data Retention, and Personal Access to Raw Data in Europe Narayanasamy, Shaman Markina, Varvara Thorogood, Adrian Blazkova, Adriana Shabani, Mahsa Knoppers, Bartha M. Prainsack, Barbara Koesters, Robert Front Genet Genetics Whole genome/exome sequencing (WGS/WES) has become widely adopted in research and, more recently, in clinical settings. Many hope that the information obtained from the interpretation of these data will have medical benefits for patients and—in some cases—also their biological relatives. Because of the manifold possibilities to reuse genomic data, enabling sequenced individuals to access their own raw (uninterpreted) genomic data is a highly debated issue. This paper reports some of the first empirical findings on personal genome access policies and practices. We interviewed 39 respondents, working at 33 institutions in 21 countries across Europe. These sequencing institutions generate massive amounts of WGS/WES data and represent varying organisational structures and operational models. Taken together, in total, these institutions have sequenced ∼317,259 genomes and exomes to date. Most of the sequencing institutions reported that they are able to store raw genomic data in compliance with various national regulations, although there was a lack of standardisation of storage formats. Interviewees from 12 of the 33 institutions included in our study reported that they had received requests for personal access to raw genomic data from sequenced individuals. In the absence of policies on how to process such requests, these were decided on an ad hoc basis; in the end, at least 28 requests were granted, while there were no reports of requests being rejected. Given the rights, interests, and liabilities at stake, it is essential that sequencing institutions adopt clear policies and processes for raw genomic data retention and personal access. Frontiers Media S.A. 2020-05-06 /pmc/articles/PMC7218066/ /pubmed/32435258 http://dx.doi.org/10.3389/fgene.2020.00303 Text en Copyright © 2020 Narayanasamy, Markina, Thorogood, Blazkova, Shabani, Knoppers, Prainsack and Koesters. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Narayanasamy, Shaman
Markina, Varvara
Thorogood, Adrian
Blazkova, Adriana
Shabani, Mahsa
Knoppers, Bartha M.
Prainsack, Barbara
Koesters, Robert
Genomic Sequencing Capacity, Data Retention, and Personal Access to Raw Data in Europe
title Genomic Sequencing Capacity, Data Retention, and Personal Access to Raw Data in Europe
title_full Genomic Sequencing Capacity, Data Retention, and Personal Access to Raw Data in Europe
title_fullStr Genomic Sequencing Capacity, Data Retention, and Personal Access to Raw Data in Europe
title_full_unstemmed Genomic Sequencing Capacity, Data Retention, and Personal Access to Raw Data in Europe
title_short Genomic Sequencing Capacity, Data Retention, and Personal Access to Raw Data in Europe
title_sort genomic sequencing capacity, data retention, and personal access to raw data in europe
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7218066/
https://www.ncbi.nlm.nih.gov/pubmed/32435258
http://dx.doi.org/10.3389/fgene.2020.00303
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