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Revenant: a database of resurrected proteins

Revenant is a database of resurrected proteins coming from extinct organisms. Currently, it contains a manually curated collection of 84 resurrected proteins derived from bibliographic data. Each protein is extensively annotated, including structural, biochemical and biophysical information. Revenan...

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Detalles Bibliográficos
Autores principales: Carletti, Matias Sebastian, Monzon, Alexander Miguel, Garcia-Rios, Emilio, Benitez, Guillermo, Hirsh, Layla, Fornasari, Maria Silvina, Parisi, Gustavo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7218706/
https://www.ncbi.nlm.nih.gov/pubmed/32400867
http://dx.doi.org/10.1093/database/baaa031
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author Carletti, Matias Sebastian
Monzon, Alexander Miguel
Garcia-Rios, Emilio
Benitez, Guillermo
Hirsh, Layla
Fornasari, Maria Silvina
Parisi, Gustavo
author_facet Carletti, Matias Sebastian
Monzon, Alexander Miguel
Garcia-Rios, Emilio
Benitez, Guillermo
Hirsh, Layla
Fornasari, Maria Silvina
Parisi, Gustavo
author_sort Carletti, Matias Sebastian
collection PubMed
description Revenant is a database of resurrected proteins coming from extinct organisms. Currently, it contains a manually curated collection of 84 resurrected proteins derived from bibliographic data. Each protein is extensively annotated, including structural, biochemical and biophysical information. Revenant contains a browse capability designed as a timeline from where the different proteins can be accessed. The oldest Revenant entries are between 4200 and 3500 million years ago, while the younger entries are between 8.8 and 6.3 million years ago. These proteins have been resurrected using computational tools called ancestral sequence reconstruction techniques combined with wet-laboratory synthesis and expression. Resurrected proteins are commonly used, with a noticeable increase during the past years, to explore and test different evolutionary hypotheses such as protein stability, to explore the origin of new functions, to get biochemical insights into past metabolisms and to explore specificity and promiscuous behaviour of ancient proteins.
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spelling pubmed-72187062020-05-18 Revenant: a database of resurrected proteins Carletti, Matias Sebastian Monzon, Alexander Miguel Garcia-Rios, Emilio Benitez, Guillermo Hirsh, Layla Fornasari, Maria Silvina Parisi, Gustavo Database (Oxford) Database Tool Revenant is a database of resurrected proteins coming from extinct organisms. Currently, it contains a manually curated collection of 84 resurrected proteins derived from bibliographic data. Each protein is extensively annotated, including structural, biochemical and biophysical information. Revenant contains a browse capability designed as a timeline from where the different proteins can be accessed. The oldest Revenant entries are between 4200 and 3500 million years ago, while the younger entries are between 8.8 and 6.3 million years ago. These proteins have been resurrected using computational tools called ancestral sequence reconstruction techniques combined with wet-laboratory synthesis and expression. Resurrected proteins are commonly used, with a noticeable increase during the past years, to explore and test different evolutionary hypotheses such as protein stability, to explore the origin of new functions, to get biochemical insights into past metabolisms and to explore specificity and promiscuous behaviour of ancient proteins. Oxford University Press 2020-05-13 /pmc/articles/PMC7218706/ /pubmed/32400867 http://dx.doi.org/10.1093/database/baaa031 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Tool
Carletti, Matias Sebastian
Monzon, Alexander Miguel
Garcia-Rios, Emilio
Benitez, Guillermo
Hirsh, Layla
Fornasari, Maria Silvina
Parisi, Gustavo
Revenant: a database of resurrected proteins
title Revenant: a database of resurrected proteins
title_full Revenant: a database of resurrected proteins
title_fullStr Revenant: a database of resurrected proteins
title_full_unstemmed Revenant: a database of resurrected proteins
title_short Revenant: a database of resurrected proteins
title_sort revenant: a database of resurrected proteins
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7218706/
https://www.ncbi.nlm.nih.gov/pubmed/32400867
http://dx.doi.org/10.1093/database/baaa031
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