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Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019

BACKGROUND: Carbapenemase-producing Escherichia coli are increasing worldwide. In recent years, an increase in OXA-244-producing E. coli isolates has been seen in the national surveillance of carbapenemase-producing organisms in Denmark. AIM: Molecular characterisation and epidemiological investigat...

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Autores principales: Hammerum, Anette M, Porsbo, Lone Jannok, Hansen, Frank, Roer, Louise, Kaya, Hülya, Henius, Anna, Møller, Karina Lauenborg, Justesen, Ulrik S, Søes, Lillian, Røder, Bent L, Thomsen, Philip K, Wang, Mikala, Søndergaard, Turid Snekloth, Holzknecht, Barbara Juliane, Østergaard, Claus, Kjerulf, Anne, Kristensen, Brian, Hasman, Henrik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: European Centre for Disease Prevention and Control (ECDC) 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7219033/
https://www.ncbi.nlm.nih.gov/pubmed/32400363
http://dx.doi.org/10.2807/1560-7917.ES.2020.25.18.1900742
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author Hammerum, Anette M
Porsbo, Lone Jannok
Hansen, Frank
Roer, Louise
Kaya, Hülya
Henius, Anna
Møller, Karina Lauenborg
Justesen, Ulrik S
Søes, Lillian
Røder, Bent L
Thomsen, Philip K
Wang, Mikala
Søndergaard, Turid Snekloth
Holzknecht, Barbara Juliane
Østergaard, Claus
Kjerulf, Anne
Kristensen, Brian
Hasman, Henrik
author_facet Hammerum, Anette M
Porsbo, Lone Jannok
Hansen, Frank
Roer, Louise
Kaya, Hülya
Henius, Anna
Møller, Karina Lauenborg
Justesen, Ulrik S
Søes, Lillian
Røder, Bent L
Thomsen, Philip K
Wang, Mikala
Søndergaard, Turid Snekloth
Holzknecht, Barbara Juliane
Østergaard, Claus
Kjerulf, Anne
Kristensen, Brian
Hasman, Henrik
author_sort Hammerum, Anette M
collection PubMed
description BACKGROUND: Carbapenemase-producing Escherichia coli are increasing worldwide. In recent years, an increase in OXA-244-producing E. coli isolates has been seen in the national surveillance of carbapenemase-producing organisms in Denmark. AIM: Molecular characterisation and epidemiological investigation of OXA-244-producing E. coli isolates from January 2016 to August 2019. METHODS: For the epidemiological investigation, data from the Danish National Patient Registry and the Danish register of civil registration were used together with data from phone interviews with patients. Isolates were characterised by analysing whole genome sequences for resistance genes, MLST and core genome MLST (cgMLST). RESULTS: In total, 24 OXA-244-producing E. coli isolates were obtained from 23 patients. Among the 23 patients, 13 reported travelling before detection of the E. coli isolates, with seven having visited countries in Northern Africa. Fifteen isolates also carried an extended-spectrum beta-lactamase gene and one had a plasmid-encoded AmpC gene. The most common detected sequence type (ST) was ST38, followed by ST69, ST167, ST10, ST361 and ST3268. Three clonal clusters were detected by cgMLST, but none of these clusters seemed to reflect nosocomial transmission in Denmark. CONCLUSION: Import of OXA-244 E. coli isolates from travelling abroad seems likely for the majority of cases. Community sources were also possible, as many of the patients had no history of hospitalisation and many of the E. coli isolates belonged to STs that are present in the community. It was not possible to point at a single country or a community source as risk factor for acquiring OXA-244-producing E. coli.
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spelling pubmed-72190332020-05-15 Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019 Hammerum, Anette M Porsbo, Lone Jannok Hansen, Frank Roer, Louise Kaya, Hülya Henius, Anna Møller, Karina Lauenborg Justesen, Ulrik S Søes, Lillian Røder, Bent L Thomsen, Philip K Wang, Mikala Søndergaard, Turid Snekloth Holzknecht, Barbara Juliane Østergaard, Claus Kjerulf, Anne Kristensen, Brian Hasman, Henrik Euro Surveill Surveillance BACKGROUND: Carbapenemase-producing Escherichia coli are increasing worldwide. In recent years, an increase in OXA-244-producing E. coli isolates has been seen in the national surveillance of carbapenemase-producing organisms in Denmark. AIM: Molecular characterisation and epidemiological investigation of OXA-244-producing E. coli isolates from January 2016 to August 2019. METHODS: For the epidemiological investigation, data from the Danish National Patient Registry and the Danish register of civil registration were used together with data from phone interviews with patients. Isolates were characterised by analysing whole genome sequences for resistance genes, MLST and core genome MLST (cgMLST). RESULTS: In total, 24 OXA-244-producing E. coli isolates were obtained from 23 patients. Among the 23 patients, 13 reported travelling before detection of the E. coli isolates, with seven having visited countries in Northern Africa. Fifteen isolates also carried an extended-spectrum beta-lactamase gene and one had a plasmid-encoded AmpC gene. The most common detected sequence type (ST) was ST38, followed by ST69, ST167, ST10, ST361 and ST3268. Three clonal clusters were detected by cgMLST, but none of these clusters seemed to reflect nosocomial transmission in Denmark. CONCLUSION: Import of OXA-244 E. coli isolates from travelling abroad seems likely for the majority of cases. Community sources were also possible, as many of the patients had no history of hospitalisation and many of the E. coli isolates belonged to STs that are present in the community. It was not possible to point at a single country or a community source as risk factor for acquiring OXA-244-producing E. coli. European Centre for Disease Prevention and Control (ECDC) 2020-05-07 /pmc/articles/PMC7219033/ /pubmed/32400363 http://dx.doi.org/10.2807/1560-7917.ES.2020.25.18.1900742 Text en This article is copyright of the authors or their affiliated institutions, 2020. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC BY 4.0) Licence. You may share and adapt the material, but must give appropriate credit to the source, provide a link to the licence, and indicate if changes were made.
spellingShingle Surveillance
Hammerum, Anette M
Porsbo, Lone Jannok
Hansen, Frank
Roer, Louise
Kaya, Hülya
Henius, Anna
Møller, Karina Lauenborg
Justesen, Ulrik S
Søes, Lillian
Røder, Bent L
Thomsen, Philip K
Wang, Mikala
Søndergaard, Turid Snekloth
Holzknecht, Barbara Juliane
Østergaard, Claus
Kjerulf, Anne
Kristensen, Brian
Hasman, Henrik
Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019
title Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019
title_full Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019
title_fullStr Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019
title_full_unstemmed Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019
title_short Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019
title_sort surveillance of oxa-244-producing escherichia coli and epidemiologic investigation of cases, denmark, january 2016 to august 2019
topic Surveillance
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7219033/
https://www.ncbi.nlm.nih.gov/pubmed/32400363
http://dx.doi.org/10.2807/1560-7917.ES.2020.25.18.1900742
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