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Inverse Solvent Isotope Effects in Enzyme-Catalyzed Reactions

Solvent isotope effects have long been used as a mechanistic tool for determining enzyme mechanisms. Most commonly, macroscopic rate constants such as k(cat) and k(cat)/K(m) are found to decrease when the reaction is performed in D(2)O for a variety of reasons including the transfer of protons. Unde...

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Autores principales: Fernandez, Patrick L., Murkin, Andrew S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7221790/
https://www.ncbi.nlm.nih.gov/pubmed/32326332
http://dx.doi.org/10.3390/molecules25081933
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author Fernandez, Patrick L.
Murkin, Andrew S.
author_facet Fernandez, Patrick L.
Murkin, Andrew S.
author_sort Fernandez, Patrick L.
collection PubMed
description Solvent isotope effects have long been used as a mechanistic tool for determining enzyme mechanisms. Most commonly, macroscopic rate constants such as k(cat) and k(cat)/K(m) are found to decrease when the reaction is performed in D(2)O for a variety of reasons including the transfer of protons. Under certain circumstances, these constants are found to increase, in what is termed an inverse solvent kinetic isotope effect (SKIE), which can be a diagnostic mechanistic feature. Generally, these phenomena can be attributed to an inverse solvent equilibrium isotope effect on a rapid equilibrium preceding the rate-limiting step(s). This review surveys inverse SKIEs in enzyme-catalyzed reactions by assessing their underlying origins in common mechanistic themes. Case studies for each category are presented, and the mechanistic implications are put into context. It is hoped that readers may find the illustrative examples valuable in planning and interpreting solvent isotope effect experiments.
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spelling pubmed-72217902020-05-21 Inverse Solvent Isotope Effects in Enzyme-Catalyzed Reactions Fernandez, Patrick L. Murkin, Andrew S. Molecules Review Solvent isotope effects have long been used as a mechanistic tool for determining enzyme mechanisms. Most commonly, macroscopic rate constants such as k(cat) and k(cat)/K(m) are found to decrease when the reaction is performed in D(2)O for a variety of reasons including the transfer of protons. Under certain circumstances, these constants are found to increase, in what is termed an inverse solvent kinetic isotope effect (SKIE), which can be a diagnostic mechanistic feature. Generally, these phenomena can be attributed to an inverse solvent equilibrium isotope effect on a rapid equilibrium preceding the rate-limiting step(s). This review surveys inverse SKIEs in enzyme-catalyzed reactions by assessing their underlying origins in common mechanistic themes. Case studies for each category are presented, and the mechanistic implications are put into context. It is hoped that readers may find the illustrative examples valuable in planning and interpreting solvent isotope effect experiments. MDPI 2020-04-21 /pmc/articles/PMC7221790/ /pubmed/32326332 http://dx.doi.org/10.3390/molecules25081933 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Fernandez, Patrick L.
Murkin, Andrew S.
Inverse Solvent Isotope Effects in Enzyme-Catalyzed Reactions
title Inverse Solvent Isotope Effects in Enzyme-Catalyzed Reactions
title_full Inverse Solvent Isotope Effects in Enzyme-Catalyzed Reactions
title_fullStr Inverse Solvent Isotope Effects in Enzyme-Catalyzed Reactions
title_full_unstemmed Inverse Solvent Isotope Effects in Enzyme-Catalyzed Reactions
title_short Inverse Solvent Isotope Effects in Enzyme-Catalyzed Reactions
title_sort inverse solvent isotope effects in enzyme-catalyzed reactions
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7221790/
https://www.ncbi.nlm.nih.gov/pubmed/32326332
http://dx.doi.org/10.3390/molecules25081933
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