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Adaptive Incremental Mixture Markov Chain Monte Carlo
We propose adaptive incremental mixture Markov chain Monte Carlo (AIMM), a novel approach to sample from challenging probability distributions defined on a general state-space. While adaptive MCMC methods usually update a parametric proposal kernel with a global rule, AIMM locally adapts a semiparam...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7224357/ https://www.ncbi.nlm.nih.gov/pubmed/32410811 http://dx.doi.org/10.1080/10618600.2019.1598872 |
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author | Maire, Florian Friel, Nial Mira, Antonietta Raftery, Adrian E. |
author_facet | Maire, Florian Friel, Nial Mira, Antonietta Raftery, Adrian E. |
author_sort | Maire, Florian |
collection | PubMed |
description | We propose adaptive incremental mixture Markov chain Monte Carlo (AIMM), a novel approach to sample from challenging probability distributions defined on a general state-space. While adaptive MCMC methods usually update a parametric proposal kernel with a global rule, AIMM locally adapts a semiparametric kernel. AIMM is based on an independent Metropolis–Hastings proposal distribution which takes the form of a finite mixture of Gaussian distributions. Central to this approach is the idea that the proposal distribution adapts to the target by locally adding a mixture component when the discrepancy between the proposal mixture and the target is deemed to be too large. As a result, the number of components in the mixture proposal is not fixed in advance. Theoretically, we prove that there exists a stochastic process that can be made arbitrarily close to AIMM and that converges to the correct target distribution. We also illustrate that it performs well in practice in a variety of challenging situations, including high-dimensional and multimodal target distributions. Finally, the methodology is successfully applied to two real data examples, including the Bayesian inference of a semiparametric regression model for the Boston Housing dataset. Supplementary materials for this article are available online. |
format | Online Article Text |
id | pubmed-7224357 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
record_format | MEDLINE/PubMed |
spelling | pubmed-72243572020-05-14 Adaptive Incremental Mixture Markov Chain Monte Carlo Maire, Florian Friel, Nial Mira, Antonietta Raftery, Adrian E. J Comput Graph Stat Article We propose adaptive incremental mixture Markov chain Monte Carlo (AIMM), a novel approach to sample from challenging probability distributions defined on a general state-space. While adaptive MCMC methods usually update a parametric proposal kernel with a global rule, AIMM locally adapts a semiparametric kernel. AIMM is based on an independent Metropolis–Hastings proposal distribution which takes the form of a finite mixture of Gaussian distributions. Central to this approach is the idea that the proposal distribution adapts to the target by locally adding a mixture component when the discrepancy between the proposal mixture and the target is deemed to be too large. As a result, the number of components in the mixture proposal is not fixed in advance. Theoretically, we prove that there exists a stochastic process that can be made arbitrarily close to AIMM and that converges to the correct target distribution. We also illustrate that it performs well in practice in a variety of challenging situations, including high-dimensional and multimodal target distributions. Finally, the methodology is successfully applied to two real data examples, including the Bayesian inference of a semiparametric regression model for the Boston Housing dataset. Supplementary materials for this article are available online. 2019-06-07 2019 /pmc/articles/PMC7224357/ /pubmed/32410811 http://dx.doi.org/10.1080/10618600.2019.1598872 Text en http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited, and is not altered, transformed, or built upon in any way. |
spellingShingle | Article Maire, Florian Friel, Nial Mira, Antonietta Raftery, Adrian E. Adaptive Incremental Mixture Markov Chain Monte Carlo |
title | Adaptive Incremental Mixture Markov Chain Monte Carlo |
title_full | Adaptive Incremental Mixture Markov Chain Monte Carlo |
title_fullStr | Adaptive Incremental Mixture Markov Chain Monte Carlo |
title_full_unstemmed | Adaptive Incremental Mixture Markov Chain Monte Carlo |
title_short | Adaptive Incremental Mixture Markov Chain Monte Carlo |
title_sort | adaptive incremental mixture markov chain monte carlo |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7224357/ https://www.ncbi.nlm.nih.gov/pubmed/32410811 http://dx.doi.org/10.1080/10618600.2019.1598872 |
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