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Evidence for rate‐dependent filtering of global extrinsic noise by biochemical reactions in mammalian cells

Recent studies have revealed that global extrinsic noise arising from stochasticity in the intracellular biochemical environment plays a critical role in heterogeneous cell physiologies. However, it remains largely unclear how such extrinsic noise dynamically influences downstream reactions and whet...

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Autores principales: Wu, Jiegen, Han, Xu, Zhai, Haotian, Yang, Tingyu, Lin, Yihan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7224485/
https://www.ncbi.nlm.nih.gov/pubmed/32407587
http://dx.doi.org/10.15252/msb.20199335
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author Wu, Jiegen
Han, Xu
Zhai, Haotian
Yang, Tingyu
Lin, Yihan
author_facet Wu, Jiegen
Han, Xu
Zhai, Haotian
Yang, Tingyu
Lin, Yihan
author_sort Wu, Jiegen
collection PubMed
description Recent studies have revealed that global extrinsic noise arising from stochasticity in the intracellular biochemical environment plays a critical role in heterogeneous cell physiologies. However, it remains largely unclear how such extrinsic noise dynamically influences downstream reactions and whether it could be neutralized by cellular reactions. Here, using fluorescent protein (FP) maturation as a model biochemical reaction, we explored how cellular reactions might combat global extrinsic noise in mammalian cells. We developed a novel single‐cell assay to systematically quantify the maturation rate and the associated noise for over a dozen FPs. By exploiting the variation in the maturation rate for different FPs, we inferred that global extrinsic noise could be temporally filtered by maturation reactions, and as a result, the noise levels for slow‐maturing FPs are lower compared to fast‐maturing FPs. This mechanism is validated by directly perturbing the maturation rates of specific FPs and measuring the resulting noise levels. Together, our results revealed a potentially general principle governing extrinsic noise propagation, where timescale separation allows cellular reactions to cope with dynamic global extrinsic noise.
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spelling pubmed-72244852020-05-15 Evidence for rate‐dependent filtering of global extrinsic noise by biochemical reactions in mammalian cells Wu, Jiegen Han, Xu Zhai, Haotian Yang, Tingyu Lin, Yihan Mol Syst Biol Articles Recent studies have revealed that global extrinsic noise arising from stochasticity in the intracellular biochemical environment plays a critical role in heterogeneous cell physiologies. However, it remains largely unclear how such extrinsic noise dynamically influences downstream reactions and whether it could be neutralized by cellular reactions. Here, using fluorescent protein (FP) maturation as a model biochemical reaction, we explored how cellular reactions might combat global extrinsic noise in mammalian cells. We developed a novel single‐cell assay to systematically quantify the maturation rate and the associated noise for over a dozen FPs. By exploiting the variation in the maturation rate for different FPs, we inferred that global extrinsic noise could be temporally filtered by maturation reactions, and as a result, the noise levels for slow‐maturing FPs are lower compared to fast‐maturing FPs. This mechanism is validated by directly perturbing the maturation rates of specific FPs and measuring the resulting noise levels. Together, our results revealed a potentially general principle governing extrinsic noise propagation, where timescale separation allows cellular reactions to cope with dynamic global extrinsic noise. John Wiley and Sons Inc. 2020-05-14 /pmc/articles/PMC7224485/ /pubmed/32407587 http://dx.doi.org/10.15252/msb.20199335 Text en © 2020 The Authors. Published under the terms of the CC BY 4.0 license This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Wu, Jiegen
Han, Xu
Zhai, Haotian
Yang, Tingyu
Lin, Yihan
Evidence for rate‐dependent filtering of global extrinsic noise by biochemical reactions in mammalian cells
title Evidence for rate‐dependent filtering of global extrinsic noise by biochemical reactions in mammalian cells
title_full Evidence for rate‐dependent filtering of global extrinsic noise by biochemical reactions in mammalian cells
title_fullStr Evidence for rate‐dependent filtering of global extrinsic noise by biochemical reactions in mammalian cells
title_full_unstemmed Evidence for rate‐dependent filtering of global extrinsic noise by biochemical reactions in mammalian cells
title_short Evidence for rate‐dependent filtering of global extrinsic noise by biochemical reactions in mammalian cells
title_sort evidence for rate‐dependent filtering of global extrinsic noise by biochemical reactions in mammalian cells
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7224485/
https://www.ncbi.nlm.nih.gov/pubmed/32407587
http://dx.doi.org/10.15252/msb.20199335
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