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Deep learning assisted detection of glaucomatous optic neuropathy and potential designs for a generalizable model

PURPOSE: To evaluate ways to improve the generalizability of a deep learning algorithm for identifying glaucomatous optic neuropathy (GON) using a limited number of fundus photographs, as well as the key features being used for classification. METHODS: A total of 944 fundus images from Taipei Vetera...

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Autores principales: Ko, Yu-Chieh, Wey, Shih-Yu, Chen, Wei-Ta, Chang, Yu-Fan, Chen, Mei-Ju, Chiou, Shih-Hwa, Liu, Catherine Jui-Ling, Lee, Chen-Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7224540/
https://www.ncbi.nlm.nih.gov/pubmed/32407355
http://dx.doi.org/10.1371/journal.pone.0233079
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author Ko, Yu-Chieh
Wey, Shih-Yu
Chen, Wei-Ta
Chang, Yu-Fan
Chen, Mei-Ju
Chiou, Shih-Hwa
Liu, Catherine Jui-Ling
Lee, Chen-Yi
author_facet Ko, Yu-Chieh
Wey, Shih-Yu
Chen, Wei-Ta
Chang, Yu-Fan
Chen, Mei-Ju
Chiou, Shih-Hwa
Liu, Catherine Jui-Ling
Lee, Chen-Yi
author_sort Ko, Yu-Chieh
collection PubMed
description PURPOSE: To evaluate ways to improve the generalizability of a deep learning algorithm for identifying glaucomatous optic neuropathy (GON) using a limited number of fundus photographs, as well as the key features being used for classification. METHODS: A total of 944 fundus images from Taipei Veterans General Hospital (TVGH) were retrospectively collected. Clinical and demographic characteristics, including structural and functional measurements of the images with GON, were recorded. Transfer learning based on VGGNet was used to construct a convolutional neural network (CNN) to identify GON. To avoid missing cases with advanced GON, an ensemble model was adopted in which a support vector machine classifier would make final classification based on cup-to-disc ratio if the CNN classifier had low-confidence score. The CNN classifier was first established using TVGH dataset, and then fine-tuned by combining the training images of TVGH and Drishti-GS datasets. Class activation map (CAM) was used to identify key features used for CNN classification. Performance of each classifier was determined through area under receiver operating characteristic curve (AUC) and compared with the ensemble model by diagnostic accuracy. RESULTS: In 187 TVGH test images, the accuracy, sensitivity, and specificity of the CNN classifier were 95.0%, 95.7%, and 94.2%, respectively, and the AUC was 0.992 compared to the 92.8% accuracy rate of the ensemble model. For the Drishti-GS test images, the accuracy of the CNN, the fine-tuned CNN and ensemble model was 33.3%, 80.3%, and 80.3%, respectively. The CNN classifier did not misclassify images with moderate to severe diseases. Class-discriminative regions revealed by CAM co-localized with known characteristics of GON. CONCLUSIONS: The ensemble model or a fine-tuned CNN classifier may be potential designs to build a generalizable deep learning model for glaucoma detection when large image databases are not available.
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spelling pubmed-72245402020-06-01 Deep learning assisted detection of glaucomatous optic neuropathy and potential designs for a generalizable model Ko, Yu-Chieh Wey, Shih-Yu Chen, Wei-Ta Chang, Yu-Fan Chen, Mei-Ju Chiou, Shih-Hwa Liu, Catherine Jui-Ling Lee, Chen-Yi PLoS One Research Article PURPOSE: To evaluate ways to improve the generalizability of a deep learning algorithm for identifying glaucomatous optic neuropathy (GON) using a limited number of fundus photographs, as well as the key features being used for classification. METHODS: A total of 944 fundus images from Taipei Veterans General Hospital (TVGH) were retrospectively collected. Clinical and demographic characteristics, including structural and functional measurements of the images with GON, were recorded. Transfer learning based on VGGNet was used to construct a convolutional neural network (CNN) to identify GON. To avoid missing cases with advanced GON, an ensemble model was adopted in which a support vector machine classifier would make final classification based on cup-to-disc ratio if the CNN classifier had low-confidence score. The CNN classifier was first established using TVGH dataset, and then fine-tuned by combining the training images of TVGH and Drishti-GS datasets. Class activation map (CAM) was used to identify key features used for CNN classification. Performance of each classifier was determined through area under receiver operating characteristic curve (AUC) and compared with the ensemble model by diagnostic accuracy. RESULTS: In 187 TVGH test images, the accuracy, sensitivity, and specificity of the CNN classifier were 95.0%, 95.7%, and 94.2%, respectively, and the AUC was 0.992 compared to the 92.8% accuracy rate of the ensemble model. For the Drishti-GS test images, the accuracy of the CNN, the fine-tuned CNN and ensemble model was 33.3%, 80.3%, and 80.3%, respectively. The CNN classifier did not misclassify images with moderate to severe diseases. Class-discriminative regions revealed by CAM co-localized with known characteristics of GON. CONCLUSIONS: The ensemble model or a fine-tuned CNN classifier may be potential designs to build a generalizable deep learning model for glaucoma detection when large image databases are not available. Public Library of Science 2020-05-14 /pmc/articles/PMC7224540/ /pubmed/32407355 http://dx.doi.org/10.1371/journal.pone.0233079 Text en © 2020 Ko et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ko, Yu-Chieh
Wey, Shih-Yu
Chen, Wei-Ta
Chang, Yu-Fan
Chen, Mei-Ju
Chiou, Shih-Hwa
Liu, Catherine Jui-Ling
Lee, Chen-Yi
Deep learning assisted detection of glaucomatous optic neuropathy and potential designs for a generalizable model
title Deep learning assisted detection of glaucomatous optic neuropathy and potential designs for a generalizable model
title_full Deep learning assisted detection of glaucomatous optic neuropathy and potential designs for a generalizable model
title_fullStr Deep learning assisted detection of glaucomatous optic neuropathy and potential designs for a generalizable model
title_full_unstemmed Deep learning assisted detection of glaucomatous optic neuropathy and potential designs for a generalizable model
title_short Deep learning assisted detection of glaucomatous optic neuropathy and potential designs for a generalizable model
title_sort deep learning assisted detection of glaucomatous optic neuropathy and potential designs for a generalizable model
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7224540/
https://www.ncbi.nlm.nih.gov/pubmed/32407355
http://dx.doi.org/10.1371/journal.pone.0233079
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