Cargando…
Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers
Bio-based production of industrial chemicals using synthetic biology can provide alternative green routes from renewable resources, allowing for cleaner production processes. To efficiently produce chemicals on-demand through microbial strain engineering, biomanufacturing foundries have developed au...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Academic Press
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7225752/ https://www.ncbi.nlm.nih.gov/pubmed/32335188 http://dx.doi.org/10.1016/j.ymben.2020.04.008 |
_version_ | 1783534132713750528 |
---|---|
author | Robinson, Christopher J. Carbonell, Pablo Jervis, Adrian J. Yan, Cunyu Hollywood, Katherine A. Dunstan, Mark S. Currin, Andrew Swainston, Neil Spiess, Reynard Taylor, Sandra Mulherin, Paul Parker, Steven Rowe, William Matthews, Nicholas E. Malone, Kirk J. Le Feuvre, Rosalind Shapira, Philip Barran, Perdita Turner, Nicholas J. Micklefield, Jason Breitling, Rainer Takano, Eriko Scrutton, Nigel S. |
author_facet | Robinson, Christopher J. Carbonell, Pablo Jervis, Adrian J. Yan, Cunyu Hollywood, Katherine A. Dunstan, Mark S. Currin, Andrew Swainston, Neil Spiess, Reynard Taylor, Sandra Mulherin, Paul Parker, Steven Rowe, William Matthews, Nicholas E. Malone, Kirk J. Le Feuvre, Rosalind Shapira, Philip Barran, Perdita Turner, Nicholas J. Micklefield, Jason Breitling, Rainer Takano, Eriko Scrutton, Nigel S. |
author_sort | Robinson, Christopher J. |
collection | PubMed |
description | Bio-based production of industrial chemicals using synthetic biology can provide alternative green routes from renewable resources, allowing for cleaner production processes. To efficiently produce chemicals on-demand through microbial strain engineering, biomanufacturing foundries have developed automated pipelines that are largely compound agnostic in their time to delivery. Here we benchmark the capabilities of a biomanufacturing pipeline to enable rapid prototyping of microbial cell factories for the production of chemically diverse industrially relevant material building blocks. Over 85 days the pipeline was able to produce 17 potential material monomers and key intermediates by combining 160 genetic parts into 115 unique biosynthetic pathways. To explore the scale-up potential of our prototype production strains, we optimized the enantioselective production of mandelic acid and hydroxymandelic acid, achieving gram-scale production in fed-batch fermenters. The high success rate in the rapid design and prototyping of microbially-produced material building blocks reveals the potential role of biofoundries in leading the transition to sustainable materials production. |
format | Online Article Text |
id | pubmed-7225752 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Academic Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-72257522020-07-01 Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers Robinson, Christopher J. Carbonell, Pablo Jervis, Adrian J. Yan, Cunyu Hollywood, Katherine A. Dunstan, Mark S. Currin, Andrew Swainston, Neil Spiess, Reynard Taylor, Sandra Mulherin, Paul Parker, Steven Rowe, William Matthews, Nicholas E. Malone, Kirk J. Le Feuvre, Rosalind Shapira, Philip Barran, Perdita Turner, Nicholas J. Micklefield, Jason Breitling, Rainer Takano, Eriko Scrutton, Nigel S. Metab Eng Article Bio-based production of industrial chemicals using synthetic biology can provide alternative green routes from renewable resources, allowing for cleaner production processes. To efficiently produce chemicals on-demand through microbial strain engineering, biomanufacturing foundries have developed automated pipelines that are largely compound agnostic in their time to delivery. Here we benchmark the capabilities of a biomanufacturing pipeline to enable rapid prototyping of microbial cell factories for the production of chemically diverse industrially relevant material building blocks. Over 85 days the pipeline was able to produce 17 potential material monomers and key intermediates by combining 160 genetic parts into 115 unique biosynthetic pathways. To explore the scale-up potential of our prototype production strains, we optimized the enantioselective production of mandelic acid and hydroxymandelic acid, achieving gram-scale production in fed-batch fermenters. The high success rate in the rapid design and prototyping of microbially-produced material building blocks reveals the potential role of biofoundries in leading the transition to sustainable materials production. Academic Press 2020-07 /pmc/articles/PMC7225752/ /pubmed/32335188 http://dx.doi.org/10.1016/j.ymben.2020.04.008 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Robinson, Christopher J. Carbonell, Pablo Jervis, Adrian J. Yan, Cunyu Hollywood, Katherine A. Dunstan, Mark S. Currin, Andrew Swainston, Neil Spiess, Reynard Taylor, Sandra Mulherin, Paul Parker, Steven Rowe, William Matthews, Nicholas E. Malone, Kirk J. Le Feuvre, Rosalind Shapira, Philip Barran, Perdita Turner, Nicholas J. Micklefield, Jason Breitling, Rainer Takano, Eriko Scrutton, Nigel S. Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers |
title | Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers |
title_full | Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers |
title_fullStr | Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers |
title_full_unstemmed | Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers |
title_short | Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers |
title_sort | rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7225752/ https://www.ncbi.nlm.nih.gov/pubmed/32335188 http://dx.doi.org/10.1016/j.ymben.2020.04.008 |
work_keys_str_mv | AT robinsonchristopherj rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT carbonellpablo rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT jervisadrianj rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT yancunyu rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT hollywoodkatherinea rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT dunstanmarks rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT currinandrew rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT swainstonneil rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT spiessreynard rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT taylorsandra rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT mulherinpaul rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT parkersteven rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT rowewilliam rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT matthewsnicholase rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT malonekirkj rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT lefeuvrerosalind rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT shapiraphilip rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT barranperdita rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT turnernicholasj rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT micklefieldjason rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT breitlingrainer rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT takanoeriko rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers AT scruttonnigels rapidprototypingofmicrobialproductionstrainsforthebiomanufactureofpotentialmaterialsmonomers |