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Exponential Time Differencing Algorithm for Pulse-Coupled Hodgkin-Huxley Neural Networks
The exponential time differencing (ETD) method allows using a large time step to efficiently evolve stiff systems such as Hodgkin-Huxley (HH) neural networks. For pulse-coupled HH networks, the synaptic spike times cannot be predetermined and are convoluted with neuron's trajectory itself. This...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7227390/ https://www.ncbi.nlm.nih.gov/pubmed/32457589 http://dx.doi.org/10.3389/fncom.2020.00040 |
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author | Tian, Zhong-qi Kyle Zhou, Douglas |
author_facet | Tian, Zhong-qi Kyle Zhou, Douglas |
author_sort | Tian, Zhong-qi Kyle |
collection | PubMed |
description | The exponential time differencing (ETD) method allows using a large time step to efficiently evolve stiff systems such as Hodgkin-Huxley (HH) neural networks. For pulse-coupled HH networks, the synaptic spike times cannot be predetermined and are convoluted with neuron's trajectory itself. This presents a challenging issue for the design of an efficient numerical simulation algorithm. The stiffness in the HH equations are quite different, for example, between the spike and non-spike regions. Here, we design a second-order adaptive exponential time differencing algorithm (AETD2) for the numerical evolution of HH neural networks. Compared with the regular second-order Runge-Kutta method (RK2), our AETD2 method can use time steps one order of magnitude larger and improve computational efficiency more than ten times while excellently capturing accurate traces of membrane potentials of HH neurons. This high accuracy and efficiency can be robustly obtained and do not depend on the dynamical regimes, connectivity structure or the network size. |
format | Online Article Text |
id | pubmed-7227390 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-72273902020-05-25 Exponential Time Differencing Algorithm for Pulse-Coupled Hodgkin-Huxley Neural Networks Tian, Zhong-qi Kyle Zhou, Douglas Front Comput Neurosci Neuroscience The exponential time differencing (ETD) method allows using a large time step to efficiently evolve stiff systems such as Hodgkin-Huxley (HH) neural networks. For pulse-coupled HH networks, the synaptic spike times cannot be predetermined and are convoluted with neuron's trajectory itself. This presents a challenging issue for the design of an efficient numerical simulation algorithm. The stiffness in the HH equations are quite different, for example, between the spike and non-spike regions. Here, we design a second-order adaptive exponential time differencing algorithm (AETD2) for the numerical evolution of HH neural networks. Compared with the regular second-order Runge-Kutta method (RK2), our AETD2 method can use time steps one order of magnitude larger and improve computational efficiency more than ten times while excellently capturing accurate traces of membrane potentials of HH neurons. This high accuracy and efficiency can be robustly obtained and do not depend on the dynamical regimes, connectivity structure or the network size. Frontiers Media S.A. 2020-05-08 /pmc/articles/PMC7227390/ /pubmed/32457589 http://dx.doi.org/10.3389/fncom.2020.00040 Text en Copyright © 2020 Tian and Zhou. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Tian, Zhong-qi Kyle Zhou, Douglas Exponential Time Differencing Algorithm for Pulse-Coupled Hodgkin-Huxley Neural Networks |
title | Exponential Time Differencing Algorithm for Pulse-Coupled Hodgkin-Huxley Neural Networks |
title_full | Exponential Time Differencing Algorithm for Pulse-Coupled Hodgkin-Huxley Neural Networks |
title_fullStr | Exponential Time Differencing Algorithm for Pulse-Coupled Hodgkin-Huxley Neural Networks |
title_full_unstemmed | Exponential Time Differencing Algorithm for Pulse-Coupled Hodgkin-Huxley Neural Networks |
title_short | Exponential Time Differencing Algorithm for Pulse-Coupled Hodgkin-Huxley Neural Networks |
title_sort | exponential time differencing algorithm for pulse-coupled hodgkin-huxley neural networks |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7227390/ https://www.ncbi.nlm.nih.gov/pubmed/32457589 http://dx.doi.org/10.3389/fncom.2020.00040 |
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