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Artificial intelligence approach fighting COVID-19 with repurposing drugs

BACKGROUND: The ongoing COVID-19 pandemic has caused more than 193,825 deaths during the past few months. A quick-to-be-identified cure for the disease will be a therapeutic medicine that has prior use experiences in patients in order to resolve the current pandemic situation before it could become...

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Autores principales: Ke, Yi-Yu, Peng, Tzu-Ting, Yeh, Teng-Kuang, Huang, Wen-Zheng, Chang, Shao-En, Wu, Szu-Huei, Hung, Hui-Chen, Hsu, Tsu-An, Lee, Shiow-Ju, Song, Jeng-Shin, Lin, Wen-Hsing, Chiang, Tung-Jung, Lin, Jiunn-Horng, Sytwu, Huey-Kang, Chen, Chiung-Tong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Chang Gung University 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7227517/
https://www.ncbi.nlm.nih.gov/pubmed/32426387
http://dx.doi.org/10.1016/j.bj.2020.05.001
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author Ke, Yi-Yu
Peng, Tzu-Ting
Yeh, Teng-Kuang
Huang, Wen-Zheng
Chang, Shao-En
Wu, Szu-Huei
Hung, Hui-Chen
Hsu, Tsu-An
Lee, Shiow-Ju
Song, Jeng-Shin
Lin, Wen-Hsing
Chiang, Tung-Jung
Lin, Jiunn-Horng
Sytwu, Huey-Kang
Chen, Chiung-Tong
author_facet Ke, Yi-Yu
Peng, Tzu-Ting
Yeh, Teng-Kuang
Huang, Wen-Zheng
Chang, Shao-En
Wu, Szu-Huei
Hung, Hui-Chen
Hsu, Tsu-An
Lee, Shiow-Ju
Song, Jeng-Shin
Lin, Wen-Hsing
Chiang, Tung-Jung
Lin, Jiunn-Horng
Sytwu, Huey-Kang
Chen, Chiung-Tong
author_sort Ke, Yi-Yu
collection PubMed
description BACKGROUND: The ongoing COVID-19 pandemic has caused more than 193,825 deaths during the past few months. A quick-to-be-identified cure for the disease will be a therapeutic medicine that has prior use experiences in patients in order to resolve the current pandemic situation before it could become worsening. Artificial intelligence (AI) technology is hereby applied to identify the marketed drugs with potential for treating COVID-19. METHODS: An AI platform was established to identify potential old drugs with anti-coronavirus activities by using two different learning databases; one consisted of the compounds reported or proven active against SARS-CoV, SARS-CoV-2, human immunodeficiency virus, influenza virus, and the other one containing the known 3C-like protease inhibitors. All AI predicted drugs were then tested for activities against a feline coronavirus in in vitro cell-based assay. These assay results were feedbacks to the AI system for relearning and thus to generate a modified AI model to search for old drugs again. RESULTS: After a few runs of AI learning and prediction processes, the AI system identified 80 marketed drugs with potential. Among them, 8 drugs (bedaquiline, brequinar, celecoxib, clofazimine, conivaptan, gemcitabine, tolcapone, and vismodegib) showed in vitro activities against the proliferation of a feline infectious peritonitis (FIP) virus in Fcwf-4 cells. In addition, 5 other drugs (boceprevir, chloroquine, homoharringtonine, tilorone, and salinomycin) were also found active during the exercises of AI approaches. CONCLUSION: Having taken advantages of AI, we identified old drugs with activities against FIP coronavirus. Further studies are underway to demonstrate their activities against SARS-CoV-2 in vitro and in vivo at clinically achievable concentrations and doses. With prior use experiences in patients, these old drugs if proven active against SARS-CoV-2 can readily be applied for fighting COVID-19 pandemic.
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spelling pubmed-72275172020-05-18 Artificial intelligence approach fighting COVID-19 with repurposing drugs Ke, Yi-Yu Peng, Tzu-Ting Yeh, Teng-Kuang Huang, Wen-Zheng Chang, Shao-En Wu, Szu-Huei Hung, Hui-Chen Hsu, Tsu-An Lee, Shiow-Ju Song, Jeng-Shin Lin, Wen-Hsing Chiang, Tung-Jung Lin, Jiunn-Horng Sytwu, Huey-Kang Chen, Chiung-Tong Biomed J Original Article BACKGROUND: The ongoing COVID-19 pandemic has caused more than 193,825 deaths during the past few months. A quick-to-be-identified cure for the disease will be a therapeutic medicine that has prior use experiences in patients in order to resolve the current pandemic situation before it could become worsening. Artificial intelligence (AI) technology is hereby applied to identify the marketed drugs with potential for treating COVID-19. METHODS: An AI platform was established to identify potential old drugs with anti-coronavirus activities by using two different learning databases; one consisted of the compounds reported or proven active against SARS-CoV, SARS-CoV-2, human immunodeficiency virus, influenza virus, and the other one containing the known 3C-like protease inhibitors. All AI predicted drugs were then tested for activities against a feline coronavirus in in vitro cell-based assay. These assay results were feedbacks to the AI system for relearning and thus to generate a modified AI model to search for old drugs again. RESULTS: After a few runs of AI learning and prediction processes, the AI system identified 80 marketed drugs with potential. Among them, 8 drugs (bedaquiline, brequinar, celecoxib, clofazimine, conivaptan, gemcitabine, tolcapone, and vismodegib) showed in vitro activities against the proliferation of a feline infectious peritonitis (FIP) virus in Fcwf-4 cells. In addition, 5 other drugs (boceprevir, chloroquine, homoharringtonine, tilorone, and salinomycin) were also found active during the exercises of AI approaches. CONCLUSION: Having taken advantages of AI, we identified old drugs with activities against FIP coronavirus. Further studies are underway to demonstrate their activities against SARS-CoV-2 in vitro and in vivo at clinically achievable concentrations and doses. With prior use experiences in patients, these old drugs if proven active against SARS-CoV-2 can readily be applied for fighting COVID-19 pandemic. Chang Gung University 2020-08 2020-05-15 /pmc/articles/PMC7227517/ /pubmed/32426387 http://dx.doi.org/10.1016/j.bj.2020.05.001 Text en © 2020 Chang Gung University. Publishing services by Elsevier B.V. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Article
Ke, Yi-Yu
Peng, Tzu-Ting
Yeh, Teng-Kuang
Huang, Wen-Zheng
Chang, Shao-En
Wu, Szu-Huei
Hung, Hui-Chen
Hsu, Tsu-An
Lee, Shiow-Ju
Song, Jeng-Shin
Lin, Wen-Hsing
Chiang, Tung-Jung
Lin, Jiunn-Horng
Sytwu, Huey-Kang
Chen, Chiung-Tong
Artificial intelligence approach fighting COVID-19 with repurposing drugs
title Artificial intelligence approach fighting COVID-19 with repurposing drugs
title_full Artificial intelligence approach fighting COVID-19 with repurposing drugs
title_fullStr Artificial intelligence approach fighting COVID-19 with repurposing drugs
title_full_unstemmed Artificial intelligence approach fighting COVID-19 with repurposing drugs
title_short Artificial intelligence approach fighting COVID-19 with repurposing drugs
title_sort artificial intelligence approach fighting covid-19 with repurposing drugs
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7227517/
https://www.ncbi.nlm.nih.gov/pubmed/32426387
http://dx.doi.org/10.1016/j.bj.2020.05.001
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