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OtoMatch: Content-based eardrum image retrieval using deep learning
Acute infections of the middle ear are the most commonly treated childhood diseases. Because complications affect children’s language learning and cognitive processes, it is essential to diagnose these diseases in a timely and accurate manner. The prevailing literature suggests that it is difficult...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7228122/ https://www.ncbi.nlm.nih.gov/pubmed/32413096 http://dx.doi.org/10.1371/journal.pone.0232776 |
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author | Camalan, Seda Niazi, Muhammad Khalid Khan Moberly, Aaron C. Teknos, Theodoros Essig, Garth Elmaraghy, Charles Taj-Schaal, Nazhat Gurcan, Metin N. |
author_facet | Camalan, Seda Niazi, Muhammad Khalid Khan Moberly, Aaron C. Teknos, Theodoros Essig, Garth Elmaraghy, Charles Taj-Schaal, Nazhat Gurcan, Metin N. |
author_sort | Camalan, Seda |
collection | PubMed |
description | Acute infections of the middle ear are the most commonly treated childhood diseases. Because complications affect children’s language learning and cognitive processes, it is essential to diagnose these diseases in a timely and accurate manner. The prevailing literature suggests that it is difficult to accurately diagnose these infections, even for experienced ear, nose, and throat (ENT) physicians. Advanced care practitioners (e.g., nurse practitioners, physician assistants) serve as first-line providers in many primary care settings and may benefit from additional guidance to appropriately determine the diagnosis and treatment of ear diseases. For this purpose, we designed a content-based image retrieval (CBIR) system (called OtoMatch) for normal, middle ear effusion, and tympanostomy tube conditions, operating on eardrum images captured with a digital otoscope. We present a method that enables the conversion of any convolutional neural network (trained for classification) into an image retrieval model. As a proof of concept, we converted a pre-trained deep learning model into an image retrieval system. We accomplished this by changing the fully connected layers into lookup tables. A database of 454 labeled eardrum images (179 normal, 179 effusion, and 96 tube cases) was used to train and test the system. On a 10-fold cross validation, the proposed method resulted in an average accuracy of 80.58% (SD 5.37%), and maximum F1 score of 0.90 while retrieving the most similar image from the database. These are promising results for the first study to demonstrate the feasibility of developing a CBIR system for eardrum images using the newly proposed methodology. |
format | Online Article Text |
id | pubmed-7228122 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-72281222020-06-01 OtoMatch: Content-based eardrum image retrieval using deep learning Camalan, Seda Niazi, Muhammad Khalid Khan Moberly, Aaron C. Teknos, Theodoros Essig, Garth Elmaraghy, Charles Taj-Schaal, Nazhat Gurcan, Metin N. PLoS One Research Article Acute infections of the middle ear are the most commonly treated childhood diseases. Because complications affect children’s language learning and cognitive processes, it is essential to diagnose these diseases in a timely and accurate manner. The prevailing literature suggests that it is difficult to accurately diagnose these infections, even for experienced ear, nose, and throat (ENT) physicians. Advanced care practitioners (e.g., nurse practitioners, physician assistants) serve as first-line providers in many primary care settings and may benefit from additional guidance to appropriately determine the diagnosis and treatment of ear diseases. For this purpose, we designed a content-based image retrieval (CBIR) system (called OtoMatch) for normal, middle ear effusion, and tympanostomy tube conditions, operating on eardrum images captured with a digital otoscope. We present a method that enables the conversion of any convolutional neural network (trained for classification) into an image retrieval model. As a proof of concept, we converted a pre-trained deep learning model into an image retrieval system. We accomplished this by changing the fully connected layers into lookup tables. A database of 454 labeled eardrum images (179 normal, 179 effusion, and 96 tube cases) was used to train and test the system. On a 10-fold cross validation, the proposed method resulted in an average accuracy of 80.58% (SD 5.37%), and maximum F1 score of 0.90 while retrieving the most similar image from the database. These are promising results for the first study to demonstrate the feasibility of developing a CBIR system for eardrum images using the newly proposed methodology. Public Library of Science 2020-05-15 /pmc/articles/PMC7228122/ /pubmed/32413096 http://dx.doi.org/10.1371/journal.pone.0232776 Text en © 2020 Camalan et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Camalan, Seda Niazi, Muhammad Khalid Khan Moberly, Aaron C. Teknos, Theodoros Essig, Garth Elmaraghy, Charles Taj-Schaal, Nazhat Gurcan, Metin N. OtoMatch: Content-based eardrum image retrieval using deep learning |
title | OtoMatch: Content-based eardrum image retrieval using deep learning |
title_full | OtoMatch: Content-based eardrum image retrieval using deep learning |
title_fullStr | OtoMatch: Content-based eardrum image retrieval using deep learning |
title_full_unstemmed | OtoMatch: Content-based eardrum image retrieval using deep learning |
title_short | OtoMatch: Content-based eardrum image retrieval using deep learning |
title_sort | otomatch: content-based eardrum image retrieval using deep learning |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7228122/ https://www.ncbi.nlm.nih.gov/pubmed/32413096 http://dx.doi.org/10.1371/journal.pone.0232776 |
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