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OtoMatch: Content-based eardrum image retrieval using deep learning

Acute infections of the middle ear are the most commonly treated childhood diseases. Because complications affect children’s language learning and cognitive processes, it is essential to diagnose these diseases in a timely and accurate manner. The prevailing literature suggests that it is difficult...

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Autores principales: Camalan, Seda, Niazi, Muhammad Khalid Khan, Moberly, Aaron C., Teknos, Theodoros, Essig, Garth, Elmaraghy, Charles, Taj-Schaal, Nazhat, Gurcan, Metin N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7228122/
https://www.ncbi.nlm.nih.gov/pubmed/32413096
http://dx.doi.org/10.1371/journal.pone.0232776
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author Camalan, Seda
Niazi, Muhammad Khalid Khan
Moberly, Aaron C.
Teknos, Theodoros
Essig, Garth
Elmaraghy, Charles
Taj-Schaal, Nazhat
Gurcan, Metin N.
author_facet Camalan, Seda
Niazi, Muhammad Khalid Khan
Moberly, Aaron C.
Teknos, Theodoros
Essig, Garth
Elmaraghy, Charles
Taj-Schaal, Nazhat
Gurcan, Metin N.
author_sort Camalan, Seda
collection PubMed
description Acute infections of the middle ear are the most commonly treated childhood diseases. Because complications affect children’s language learning and cognitive processes, it is essential to diagnose these diseases in a timely and accurate manner. The prevailing literature suggests that it is difficult to accurately diagnose these infections, even for experienced ear, nose, and throat (ENT) physicians. Advanced care practitioners (e.g., nurse practitioners, physician assistants) serve as first-line providers in many primary care settings and may benefit from additional guidance to appropriately determine the diagnosis and treatment of ear diseases. For this purpose, we designed a content-based image retrieval (CBIR) system (called OtoMatch) for normal, middle ear effusion, and tympanostomy tube conditions, operating on eardrum images captured with a digital otoscope. We present a method that enables the conversion of any convolutional neural network (trained for classification) into an image retrieval model. As a proof of concept, we converted a pre-trained deep learning model into an image retrieval system. We accomplished this by changing the fully connected layers into lookup tables. A database of 454 labeled eardrum images (179 normal, 179 effusion, and 96 tube cases) was used to train and test the system. On a 10-fold cross validation, the proposed method resulted in an average accuracy of 80.58% (SD 5.37%), and maximum F1 score of 0.90 while retrieving the most similar image from the database. These are promising results for the first study to demonstrate the feasibility of developing a CBIR system for eardrum images using the newly proposed methodology.
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spelling pubmed-72281222020-06-01 OtoMatch: Content-based eardrum image retrieval using deep learning Camalan, Seda Niazi, Muhammad Khalid Khan Moberly, Aaron C. Teknos, Theodoros Essig, Garth Elmaraghy, Charles Taj-Schaal, Nazhat Gurcan, Metin N. PLoS One Research Article Acute infections of the middle ear are the most commonly treated childhood diseases. Because complications affect children’s language learning and cognitive processes, it is essential to diagnose these diseases in a timely and accurate manner. The prevailing literature suggests that it is difficult to accurately diagnose these infections, even for experienced ear, nose, and throat (ENT) physicians. Advanced care practitioners (e.g., nurse practitioners, physician assistants) serve as first-line providers in many primary care settings and may benefit from additional guidance to appropriately determine the diagnosis and treatment of ear diseases. For this purpose, we designed a content-based image retrieval (CBIR) system (called OtoMatch) for normal, middle ear effusion, and tympanostomy tube conditions, operating on eardrum images captured with a digital otoscope. We present a method that enables the conversion of any convolutional neural network (trained for classification) into an image retrieval model. As a proof of concept, we converted a pre-trained deep learning model into an image retrieval system. We accomplished this by changing the fully connected layers into lookup tables. A database of 454 labeled eardrum images (179 normal, 179 effusion, and 96 tube cases) was used to train and test the system. On a 10-fold cross validation, the proposed method resulted in an average accuracy of 80.58% (SD 5.37%), and maximum F1 score of 0.90 while retrieving the most similar image from the database. These are promising results for the first study to demonstrate the feasibility of developing a CBIR system for eardrum images using the newly proposed methodology. Public Library of Science 2020-05-15 /pmc/articles/PMC7228122/ /pubmed/32413096 http://dx.doi.org/10.1371/journal.pone.0232776 Text en © 2020 Camalan et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Camalan, Seda
Niazi, Muhammad Khalid Khan
Moberly, Aaron C.
Teknos, Theodoros
Essig, Garth
Elmaraghy, Charles
Taj-Schaal, Nazhat
Gurcan, Metin N.
OtoMatch: Content-based eardrum image retrieval using deep learning
title OtoMatch: Content-based eardrum image retrieval using deep learning
title_full OtoMatch: Content-based eardrum image retrieval using deep learning
title_fullStr OtoMatch: Content-based eardrum image retrieval using deep learning
title_full_unstemmed OtoMatch: Content-based eardrum image retrieval using deep learning
title_short OtoMatch: Content-based eardrum image retrieval using deep learning
title_sort otomatch: content-based eardrum image retrieval using deep learning
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7228122/
https://www.ncbi.nlm.nih.gov/pubmed/32413096
http://dx.doi.org/10.1371/journal.pone.0232776
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