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Generation of Pseudo-CT using High-Degree Polynomial Regression on Dual-Contrast Pelvic MRI Data
Increasing interests in using magnetic resonance imaging only in radiation therapy require methods for predicting the computed tomography numbers from MRI data. Here we propose a simple voxel method to generate the pseudo-CT (pCT) image using dual-contrast pelvic MRI data. The method is first traine...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7229007/ https://www.ncbi.nlm.nih.gov/pubmed/32415138 http://dx.doi.org/10.1038/s41598-020-64842-3 |
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author | Leu, Samuel C. Huang, Zhibin Lin, Ziwei |
author_facet | Leu, Samuel C. Huang, Zhibin Lin, Ziwei |
author_sort | Leu, Samuel C. |
collection | PubMed |
description | Increasing interests in using magnetic resonance imaging only in radiation therapy require methods for predicting the computed tomography numbers from MRI data. Here we propose a simple voxel method to generate the pseudo-CT (pCT) image using dual-contrast pelvic MRI data. The method is first trained with the CT data and dual-contrast MRI data (two sets of MRI with different sequences) of multiple patients, where the anatomical structures in the images after deformable image registration are segmented into several regions, and after MRI intensity normalizations a regression analysis is used to determine a two-variable polynomial function for each region to relate a voxel’s two MRI intensity values to its CT number. We first evaluate the accuracy via the Hounsfield unit (HU) difference between the pseudo-CT and reference-CT (rCT) images and obtain the average mean absolute error as 40.3 ± 2.9 HU from leave-one-out-cross-validation (LOOCV) across all six patients, which is better than most previous results and comparable to another study using the more complicated atlas-based method. We also perform a dosimetric evaluation of the treatment plans based on pCT and rCT images and find the average passing rate within 2% dose difference to be 95.4% in point-to-point dose comparisons. Therefore, our method shows encouraging results in predicting the CT numbers. This polynomial method needs less computer storage than the interpolation method and can be readily extended to the case of more than two MRI sequences. |
format | Online Article Text |
id | pubmed-7229007 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-72290072020-05-26 Generation of Pseudo-CT using High-Degree Polynomial Regression on Dual-Contrast Pelvic MRI Data Leu, Samuel C. Huang, Zhibin Lin, Ziwei Sci Rep Article Increasing interests in using magnetic resonance imaging only in radiation therapy require methods for predicting the computed tomography numbers from MRI data. Here we propose a simple voxel method to generate the pseudo-CT (pCT) image using dual-contrast pelvic MRI data. The method is first trained with the CT data and dual-contrast MRI data (two sets of MRI with different sequences) of multiple patients, where the anatomical structures in the images after deformable image registration are segmented into several regions, and after MRI intensity normalizations a regression analysis is used to determine a two-variable polynomial function for each region to relate a voxel’s two MRI intensity values to its CT number. We first evaluate the accuracy via the Hounsfield unit (HU) difference between the pseudo-CT and reference-CT (rCT) images and obtain the average mean absolute error as 40.3 ± 2.9 HU from leave-one-out-cross-validation (LOOCV) across all six patients, which is better than most previous results and comparable to another study using the more complicated atlas-based method. We also perform a dosimetric evaluation of the treatment plans based on pCT and rCT images and find the average passing rate within 2% dose difference to be 95.4% in point-to-point dose comparisons. Therefore, our method shows encouraging results in predicting the CT numbers. This polynomial method needs less computer storage than the interpolation method and can be readily extended to the case of more than two MRI sequences. Nature Publishing Group UK 2020-05-15 /pmc/articles/PMC7229007/ /pubmed/32415138 http://dx.doi.org/10.1038/s41598-020-64842-3 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Leu, Samuel C. Huang, Zhibin Lin, Ziwei Generation of Pseudo-CT using High-Degree Polynomial Regression on Dual-Contrast Pelvic MRI Data |
title | Generation of Pseudo-CT using High-Degree Polynomial Regression on Dual-Contrast Pelvic MRI Data |
title_full | Generation of Pseudo-CT using High-Degree Polynomial Regression on Dual-Contrast Pelvic MRI Data |
title_fullStr | Generation of Pseudo-CT using High-Degree Polynomial Regression on Dual-Contrast Pelvic MRI Data |
title_full_unstemmed | Generation of Pseudo-CT using High-Degree Polynomial Regression on Dual-Contrast Pelvic MRI Data |
title_short | Generation of Pseudo-CT using High-Degree Polynomial Regression on Dual-Contrast Pelvic MRI Data |
title_sort | generation of pseudo-ct using high-degree polynomial regression on dual-contrast pelvic mri data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7229007/ https://www.ncbi.nlm.nih.gov/pubmed/32415138 http://dx.doi.org/10.1038/s41598-020-64842-3 |
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