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Inventory statistics meet big data: complications for estimating numbers of species
We point out complications inherent in biodiversity inventory metrics when applied to large-scale datasets. The number of units of inventory effort (e.g., days of inventory effort) in which a species is detected saturates, such that crucial numbers of detections of rare species approach zero. Any ra...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7229767/ https://www.ncbi.nlm.nih.gov/pubmed/32440370 http://dx.doi.org/10.7717/peerj.8872 |
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author | Khalighifar, Ali Jiménez, Laura Nuñez-Penichet, Claudia Freeman, Benedictus Ingenloff, Kate Jiménez-García, Daniel Peterson, Town |
author_facet | Khalighifar, Ali Jiménez, Laura Nuñez-Penichet, Claudia Freeman, Benedictus Ingenloff, Kate Jiménez-García, Daniel Peterson, Town |
author_sort | Khalighifar, Ali |
collection | PubMed |
description | We point out complications inherent in biodiversity inventory metrics when applied to large-scale datasets. The number of units of inventory effort (e.g., days of inventory effort) in which a species is detected saturates, such that crucial numbers of detections of rare species approach zero. Any rare errors can then come to dominate species richness estimates, creating upward biases in estimates of species numbers. We document the problem via simulations of sampling from virtual biotas, illustrate its potential using a large empirical dataset (bird records from Cape May, NJ, USA), and outline the circumstances under which these problems may be expected to emerge. |
format | Online Article Text |
id | pubmed-7229767 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-72297672020-05-21 Inventory statistics meet big data: complications for estimating numbers of species Khalighifar, Ali Jiménez, Laura Nuñez-Penichet, Claudia Freeman, Benedictus Ingenloff, Kate Jiménez-García, Daniel Peterson, Town PeerJ Biodiversity We point out complications inherent in biodiversity inventory metrics when applied to large-scale datasets. The number of units of inventory effort (e.g., days of inventory effort) in which a species is detected saturates, such that crucial numbers of detections of rare species approach zero. Any rare errors can then come to dominate species richness estimates, creating upward biases in estimates of species numbers. We document the problem via simulations of sampling from virtual biotas, illustrate its potential using a large empirical dataset (bird records from Cape May, NJ, USA), and outline the circumstances under which these problems may be expected to emerge. PeerJ Inc. 2020-05-13 /pmc/articles/PMC7229767/ /pubmed/32440370 http://dx.doi.org/10.7717/peerj.8872 Text en © 2020 Khalighifar et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Biodiversity Khalighifar, Ali Jiménez, Laura Nuñez-Penichet, Claudia Freeman, Benedictus Ingenloff, Kate Jiménez-García, Daniel Peterson, Town Inventory statistics meet big data: complications for estimating numbers of species |
title | Inventory statistics meet big data: complications for estimating numbers of species |
title_full | Inventory statistics meet big data: complications for estimating numbers of species |
title_fullStr | Inventory statistics meet big data: complications for estimating numbers of species |
title_full_unstemmed | Inventory statistics meet big data: complications for estimating numbers of species |
title_short | Inventory statistics meet big data: complications for estimating numbers of species |
title_sort | inventory statistics meet big data: complications for estimating numbers of species |
topic | Biodiversity |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7229767/ https://www.ncbi.nlm.nih.gov/pubmed/32440370 http://dx.doi.org/10.7717/peerj.8872 |
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