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Inventory statistics meet big data: complications for estimating numbers of species

We point out complications inherent in biodiversity inventory metrics when applied to large-scale datasets. The number of units of inventory effort (e.g., days of inventory effort) in which a species is detected saturates, such that crucial numbers of detections of rare species approach zero. Any ra...

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Detalles Bibliográficos
Autores principales: Khalighifar, Ali, Jiménez, Laura, Nuñez-Penichet, Claudia, Freeman, Benedictus, Ingenloff, Kate, Jiménez-García, Daniel, Peterson, Town
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7229767/
https://www.ncbi.nlm.nih.gov/pubmed/32440370
http://dx.doi.org/10.7717/peerj.8872
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author Khalighifar, Ali
Jiménez, Laura
Nuñez-Penichet, Claudia
Freeman, Benedictus
Ingenloff, Kate
Jiménez-García, Daniel
Peterson, Town
author_facet Khalighifar, Ali
Jiménez, Laura
Nuñez-Penichet, Claudia
Freeman, Benedictus
Ingenloff, Kate
Jiménez-García, Daniel
Peterson, Town
author_sort Khalighifar, Ali
collection PubMed
description We point out complications inherent in biodiversity inventory metrics when applied to large-scale datasets. The number of units of inventory effort (e.g., days of inventory effort) in which a species is detected saturates, such that crucial numbers of detections of rare species approach zero. Any rare errors can then come to dominate species richness estimates, creating upward biases in estimates of species numbers. We document the problem via simulations of sampling from virtual biotas, illustrate its potential using a large empirical dataset (bird records from Cape May, NJ, USA), and outline the circumstances under which these problems may be expected to emerge.
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spelling pubmed-72297672020-05-21 Inventory statistics meet big data: complications for estimating numbers of species Khalighifar, Ali Jiménez, Laura Nuñez-Penichet, Claudia Freeman, Benedictus Ingenloff, Kate Jiménez-García, Daniel Peterson, Town PeerJ Biodiversity We point out complications inherent in biodiversity inventory metrics when applied to large-scale datasets. The number of units of inventory effort (e.g., days of inventory effort) in which a species is detected saturates, such that crucial numbers of detections of rare species approach zero. Any rare errors can then come to dominate species richness estimates, creating upward biases in estimates of species numbers. We document the problem via simulations of sampling from virtual biotas, illustrate its potential using a large empirical dataset (bird records from Cape May, NJ, USA), and outline the circumstances under which these problems may be expected to emerge. PeerJ Inc. 2020-05-13 /pmc/articles/PMC7229767/ /pubmed/32440370 http://dx.doi.org/10.7717/peerj.8872 Text en © 2020 Khalighifar et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Biodiversity
Khalighifar, Ali
Jiménez, Laura
Nuñez-Penichet, Claudia
Freeman, Benedictus
Ingenloff, Kate
Jiménez-García, Daniel
Peterson, Town
Inventory statistics meet big data: complications for estimating numbers of species
title Inventory statistics meet big data: complications for estimating numbers of species
title_full Inventory statistics meet big data: complications for estimating numbers of species
title_fullStr Inventory statistics meet big data: complications for estimating numbers of species
title_full_unstemmed Inventory statistics meet big data: complications for estimating numbers of species
title_short Inventory statistics meet big data: complications for estimating numbers of species
title_sort inventory statistics meet big data: complications for estimating numbers of species
topic Biodiversity
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7229767/
https://www.ncbi.nlm.nih.gov/pubmed/32440370
http://dx.doi.org/10.7717/peerj.8872
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