Cargando…

Application of 16S rRNA gene sequencing in Helicobacter pylori detection

Helicobacter pylori is one of the major stomach microbiome components, promoting development of inflammation and gastric cancer in humans. H. pylori has a unique ability to transform into a coccoidal form which is difficult to detect by many diagnostic methods, such as urease activity detection, and...

Descripción completa

Detalles Bibliográficos
Autores principales:	Szymczak, Aleksander, Ferenc, Stanisław, Majewska, Joanna, Miernikiewicz, Paulina, Gnus, Jan, Witkiewicz, Wojciech, Dąbrowska, Krystyna
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2020
Materias:	Bioinformatics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7229771/ https://www.ncbi.nlm.nih.gov/pubmed/32440373 http://dx.doi.org/10.7717/peerj.9099

Ejemplares similares

New Phage-Derived Antibacterial Enzyme PolaR Targeting Rothia spp.
por: Miernikiewicz, Paulina, et al.
Publicado: (2023)

Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences
por: Edgar, Robert C.
Publicado: (2018)

Dumpster diving for diatom plastid 16S rRNA genes
por: Bonfantine, Krista L., et al.
Publicado: (2021)

Antibodies specific to SARS-CoV-2 proteins N, S and E in COVID-19 patients in the normal population and in historical samples
por: Szymczak, Aleksander, et al.
Publicado: (2021)

16S-FASAS: an integrated pipeline for synthetic full-length 16S rRNA gene sequencing data analysis
por: Zhang, Ke, et al.
Publicado: (2022)

De novo species identification using 16S rRNA gene nanopore sequencing
por: Angell, Inga Leena, et al.
Publicado: (2020)

Alteration of the gut microbiota associated with childhood obesity by 16S rRNA gene sequencing
por: Chen, Xiaowei, et al.
Publicado: (2020)

Taxonomy annotation and guide tree errors in 16S rRNA databases
por: Edgar, Robert
Publicado: (2018)

Evolution of the T4 phage virion is driven by selection pressure from non-bacterial factors
por: Majewska, Joanna, et al.
Publicado: (2023)

The impact of storage conditions on human stool 16S rRNA microbiome composition and diversity
por: Carruthers, Lauren V., et al.
Publicado: (2019)

Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons
por: Lagkouvardos, Ilias, et al.
Publicado: (2017)

A heritability-based comparison of methods used to cluster 16S rRNA gene sequences into operational taxonomic units
por: Jackson, Matthew A., et al.
Publicado: (2016)

A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq
por: Burke, Catherine M., et al.
Publicado: (2016)

Helicobacter pylori virulence factors: relationship between genetic variability and phylogeographic origin
por: Rodriguez, Aura M., et al.
Publicado: (2021)

Different analysis strategies of 16S rRNA gene data from rodent studies generate contrasting views of gut bacterial communities associated with diet, health and obesity
por: Garcia-Mazcorro, Jose F., et al.
Publicado: (2020)

Induction of Phage-Specific Antibodies by Two Therapeutic Staphylococcal Bacteriophages Administered per os
por: Majewska, Joanna, et al.
Publicado: (2019)

Comparative genomics analysis of statistically significant genomic islands of Helicobacter pylori strains for better understanding the disease prognosis
por: Chakraborty, Joyeeta, et al.
Publicado: (2022)

Rapid evolution of the Helicobacter pylori AlpA adhesin in a high gastric cancer risk region from Colombia
por: Gutiérrez-Escobar, Andrés Julián, et al.
Publicado: (2018)

Molecular evolution of the VacA p55 binding domain of Helicobacter pylori in mestizos from a high gastric cancer region of Colombia
por: Gutiérrez-Escobar, Andrés J., et al.
Publicado: (2019)

A systematic computational analysis of the rRNA–3′ UTR sequence complementarity suggests a regulatory mechanism influencing post-termination events in metazoan translation
por: Pánek, Josef, et al.
Publicado: (2016)

DNA Dye Sytox Green in Detection of Bacteriolytic Activity: High Speed, Precision and Sensitivity Demonstrated With Endolysins
por: Harhala, Marek, et al.
Publicado: (2021)

Mutations in the 23S rRNA gene of Helicobacter pylori associated with clarithromycin resistance.
por: Kim, Kyung Suk, et al.
Publicado: (2002)

16S-ITGDB: An Integrated Database for Improving Species Classification of Prokaryotic 16S Ribosomal RNA Sequences
por: Hsieh, Yu-Peng, et al.
Publicado: (2022)

Safety Studies of Pneumococcal Endolysins Cpl-1 and Pal
por: Harhala, Marek, et al.
Publicado: (2018)

Correlations of Host Genetics and Gut Microbiome Composition
por: Dąbrowska, Krystyna, et al.
Publicado: (2016)

Calprotectin and Receptor for Advanced Glycation End Products as a Potential Biomarker in Abdominal Aortic Aneurysm
por: Hauzer, Willy, et al.
Publicado: (2020)

Evolution of Helicobacter spp: variability of virulence factors and their relationship to pathogenicity
por: Prada, Carlos F., et al.
Publicado: (2022)

Mutations in the 23S rRNA gene are associated with clarithromycin resistance in Helicobacter pylori isolates in Brazil
por: Ribeiro, Marcelo L, et al.
Publicado: (2003)

Punctual mutations in 23S rRNA gene of clarithromycin-resistant Helicobacter pylori in Colombian populations
por: Matta, Andrés Jenuer, et al.
Publicado: (2018)

Detection and variability analyses of CRISPR-like loci in the H. pylori genome
por: García-Zea, Jerson Alexander, et al.
Publicado: (2019)

Evaluation of full-length nanopore 16S sequencing for detection of pathogens in microbial keratitis
por: Low, Liying, et al.
Publicado: (2021)

Core/shell-type nanorods of Tb(3+)-doped LaPO(4), modified with amine groups, revealing reduced cytotoxicity
por: Runowski, Marcin, et al.
Publicado: (2013)

Molecular Phylogenetic Analysis of 16S rRNA Sequences Identified Two Lineages of Helicobacter pylori Strains Detected from Different Regions in Sudan Suggestive of Differential Evolution
por: Idris, Abeer Babiker, et al.
Publicado: (2020)

Identification of DEGs and transcription factors involved in H. pylori-associated inflammation and their relevance with gastric cancer
por: Yin, Honghao, et al.
Publicado: (2020)

Response of Gastric Epithelial Progenitors to Helicobacter pylori Isolates Obtained from Swedish Patients with Chronic Atrophic Gastritis
por: Giannakis, Marios, et al.
Publicado: (2009)

Diagnosis of Genus Helicobacter through a hemi-nested PCR assay of 16S rRNA
por: Qin, Heping, et al.
Publicado: (2016)

The interplay between mutations in cagA, 23S rRNA, gyrA and drug resistance in Helicobacter pylori
por: Vianna, Júlia Silveira, et al.
Publicado: (2018)

Molecular Diagnosis of Helicobacter Pylori Strain by 16S rDNA PCR Amplification and Direct Sequencing
por: Banerjee, Hirendra nath, et al.
Publicado: (2011)

MLSTar: automatic multilocus sequence typing of bacterial genomes in R
por: Ferrés, Ignacio, et al.
Publicado: (2018)

Immunogenicity of Endolysin PlyC
por: Harhala, Marek Adam, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_34j3u4n3bde000vu7s5vfa4ofc