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The Polycomb Orthologues in Teleost Fishes and Their Expression in the Zebrafish Model

The Polycomb Repressive Complex 1 (PRC1) is a chromatin-associated protein complex involved in transcriptional repression of hundreds of genes controlling development and differentiation processes, but also involved in cancer and stem cell biology. Within the canonical PRC1, members of Pc/CBX protei...

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Autores principales: Raby, Ludivine, Völkel, Pamela, Le Bourhis, Xuefen, Angrand, Pierre-Olivier
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7230241/
https://www.ncbi.nlm.nih.gov/pubmed/32230868
http://dx.doi.org/10.3390/genes11040362
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author Raby, Ludivine
Völkel, Pamela
Le Bourhis, Xuefen
Angrand, Pierre-Olivier
author_facet Raby, Ludivine
Völkel, Pamela
Le Bourhis, Xuefen
Angrand, Pierre-Olivier
author_sort Raby, Ludivine
collection PubMed
description The Polycomb Repressive Complex 1 (PRC1) is a chromatin-associated protein complex involved in transcriptional repression of hundreds of genes controlling development and differentiation processes, but also involved in cancer and stem cell biology. Within the canonical PRC1, members of Pc/CBX protein family are responsible for the targeting of the complex to specific gene loci. In mammals, the Pc/CBX protein family is composed of five members generating, through mutual exclusion, different PRC1 complexes with potentially distinct cellular functions. Here, we performed a global analysis of the cbx gene family in 68 teleost species and traced the distribution of the cbx genes through teleost evolution in six fish super-orders. We showed that after the teleost-specific whole genome duplication, cbx4, cbx7 and cbx8 are retained as pairs of ohnologues. In contrast, cbx2 and cbx6 are present as pairs of ohnologues in the genome of several teleost clades but as singletons in others. Furthermore, since zebrafish is a widely used vertebrate model for studying development, we report on the expression of the cbx family members during zebrafish development and in adult tissues. We showed that all cbx genes are ubiquitously expressed with some variations during early development.
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spelling pubmed-72302412020-05-28 The Polycomb Orthologues in Teleost Fishes and Their Expression in the Zebrafish Model Raby, Ludivine Völkel, Pamela Le Bourhis, Xuefen Angrand, Pierre-Olivier Genes (Basel) Article The Polycomb Repressive Complex 1 (PRC1) is a chromatin-associated protein complex involved in transcriptional repression of hundreds of genes controlling development and differentiation processes, but also involved in cancer and stem cell biology. Within the canonical PRC1, members of Pc/CBX protein family are responsible for the targeting of the complex to specific gene loci. In mammals, the Pc/CBX protein family is composed of five members generating, through mutual exclusion, different PRC1 complexes with potentially distinct cellular functions. Here, we performed a global analysis of the cbx gene family in 68 teleost species and traced the distribution of the cbx genes through teleost evolution in six fish super-orders. We showed that after the teleost-specific whole genome duplication, cbx4, cbx7 and cbx8 are retained as pairs of ohnologues. In contrast, cbx2 and cbx6 are present as pairs of ohnologues in the genome of several teleost clades but as singletons in others. Furthermore, since zebrafish is a widely used vertebrate model for studying development, we report on the expression of the cbx family members during zebrafish development and in adult tissues. We showed that all cbx genes are ubiquitously expressed with some variations during early development. MDPI 2020-03-27 /pmc/articles/PMC7230241/ /pubmed/32230868 http://dx.doi.org/10.3390/genes11040362 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Raby, Ludivine
Völkel, Pamela
Le Bourhis, Xuefen
Angrand, Pierre-Olivier
The Polycomb Orthologues in Teleost Fishes and Their Expression in the Zebrafish Model
title The Polycomb Orthologues in Teleost Fishes and Their Expression in the Zebrafish Model
title_full The Polycomb Orthologues in Teleost Fishes and Their Expression in the Zebrafish Model
title_fullStr The Polycomb Orthologues in Teleost Fishes and Their Expression in the Zebrafish Model
title_full_unstemmed The Polycomb Orthologues in Teleost Fishes and Their Expression in the Zebrafish Model
title_short The Polycomb Orthologues in Teleost Fishes and Their Expression in the Zebrafish Model
title_sort polycomb orthologues in teleost fishes and their expression in the zebrafish model
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7230241/
https://www.ncbi.nlm.nih.gov/pubmed/32230868
http://dx.doi.org/10.3390/genes11040362
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