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Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins

During its first two and a half months, the recently emerged 2019 novel coronavirus, SARS-CoV-2, has already infected over one-hundred thousand people worldwide and has taken more than four thousand lives. However, the swiftly spreading virus also caused an unprecedentedly rapid response from the re...

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Autores principales: Srinivasan, Suhas, Cui, Hongzhu, Gao, Ziyang, Liu, Ming, Lu, Senbao, Mkandawire, Winnie, Narykov, Oleksandr, Sun, Mo, Korkin, Dmitry
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7232164/
https://www.ncbi.nlm.nih.gov/pubmed/32218151
http://dx.doi.org/10.3390/v12040360
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author Srinivasan, Suhas
Cui, Hongzhu
Gao, Ziyang
Liu, Ming
Lu, Senbao
Mkandawire, Winnie
Narykov, Oleksandr
Sun, Mo
Korkin, Dmitry
author_facet Srinivasan, Suhas
Cui, Hongzhu
Gao, Ziyang
Liu, Ming
Lu, Senbao
Mkandawire, Winnie
Narykov, Oleksandr
Sun, Mo
Korkin, Dmitry
author_sort Srinivasan, Suhas
collection PubMed
description During its first two and a half months, the recently emerged 2019 novel coronavirus, SARS-CoV-2, has already infected over one-hundred thousand people worldwide and has taken more than four thousand lives. However, the swiftly spreading virus also caused an unprecedentedly rapid response from the research community facing the unknown health challenge of potentially enormous proportions. Unfortunately, the experimental research to understand the molecular mechanisms behind the viral infection and to design a vaccine or antivirals is costly and takes months to develop. To expedite the advancement of our knowledge, we leveraged data about the related coronaviruses that is readily available in public databases and integrated these data into a single computational pipeline. As a result, we provide comprehensive structural genomics and interactomics roadmaps of SARS-CoV-2 and use this information to infer the possible functional differences and similarities with the related SARS coronavirus. All data are made publicly available to the research community.
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spelling pubmed-72321642020-05-22 Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins Srinivasan, Suhas Cui, Hongzhu Gao, Ziyang Liu, Ming Lu, Senbao Mkandawire, Winnie Narykov, Oleksandr Sun, Mo Korkin, Dmitry Viruses Article During its first two and a half months, the recently emerged 2019 novel coronavirus, SARS-CoV-2, has already infected over one-hundred thousand people worldwide and has taken more than four thousand lives. However, the swiftly spreading virus also caused an unprecedentedly rapid response from the research community facing the unknown health challenge of potentially enormous proportions. Unfortunately, the experimental research to understand the molecular mechanisms behind the viral infection and to design a vaccine or antivirals is costly and takes months to develop. To expedite the advancement of our knowledge, we leveraged data about the related coronaviruses that is readily available in public databases and integrated these data into a single computational pipeline. As a result, we provide comprehensive structural genomics and interactomics roadmaps of SARS-CoV-2 and use this information to infer the possible functional differences and similarities with the related SARS coronavirus. All data are made publicly available to the research community. MDPI 2020-03-25 /pmc/articles/PMC7232164/ /pubmed/32218151 http://dx.doi.org/10.3390/v12040360 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Srinivasan, Suhas
Cui, Hongzhu
Gao, Ziyang
Liu, Ming
Lu, Senbao
Mkandawire, Winnie
Narykov, Oleksandr
Sun, Mo
Korkin, Dmitry
Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins
title Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins
title_full Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins
title_fullStr Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins
title_full_unstemmed Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins
title_short Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins
title_sort structural genomics of sars-cov-2 indicates evolutionary conserved functional regions of viral proteins
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7232164/
https://www.ncbi.nlm.nih.gov/pubmed/32218151
http://dx.doi.org/10.3390/v12040360
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