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O11.4. INTERACTOME OVERLAP BETWEEN SCHIZOPHRENIA AND COGNITION
BACKGROUND: Cognitive impairments constitute a core feature of schizophrenia, and a genetic overlap between schizophrenia and cognitive functioning in healthy individuals has been identified. However, due to the high polygenicity and complex genetic architecture of both traits, overlapping biologica...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7233998/ http://dx.doi.org/10.1093/schbul/sbaa028.064 |
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author | Koch, Elise Rosenthale, Brin Lundquist, Anders Chen, Chi-Hua Kauppi, Karolina |
author_facet | Koch, Elise Rosenthale, Brin Lundquist, Anders Chen, Chi-Hua Kauppi, Karolina |
author_sort | Koch, Elise |
collection | PubMed |
description | BACKGROUND: Cognitive impairments constitute a core feature of schizophrenia, and a genetic overlap between schizophrenia and cognitive functioning in healthy individuals has been identified. However, due to the high polygenicity and complex genetic architecture of both traits, overlapping biological pathways have not yet been identified between schizophrenia and normal cognitive ability. Network medicine offers a framework to study biologically meaningful gene networks through protein-protein interactions among risk genes. Here, established network-based methods were used to further reveal the biological relatedness of schizophrenia and cognition. METHODS: The protein interactome was used to examine the genetic link between schizophrenia risk genes and genes associated with cognitive performance in healthy individuals. First, we used a method called network separation to examine if there is an overlap between schizophrenia and cognition in the interactome network space. Then, we used network propagation analyses to identify schizophrenia risk genes that are close to cognition-associated genes in the interactome network space. Gene ontology and pathway enrichment analysis was performed to describe the function of this gene set. RESULTS: Network separation analyses showed a profound interactome overlap between schizophrenia risk genes and genes associated with cognitive performance (SAB = -0.22, z-score = -6.80, p = 5.38e-12). We identified 140 schizophrenia risk genes that are close to cognition-associated genes in the interactome. Risk genes close to cognition were enriched for pathways including long-term potentiation and Alzheimer’s disease, and included genes with a role in neurotransmitter systems implemented in cognition, such as glutamate and dopamine, that were not part of the direct genetic overlap. Moreover, schizophrenia risk genes close to cognition included 45 druggable genes not yet used as drug targets. DISCUSSION: These results pinpoint schizophrenia risk genes of particular interest for further examination in schizophrenia patient groups to reveal the genetic architecture of cognitive impairments in schizophrenia, of which some are druggable genes with potential as candidate targets for cognitive enhancing drugs. |
format | Online Article Text |
id | pubmed-7233998 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-72339982020-05-23 O11.4. INTERACTOME OVERLAP BETWEEN SCHIZOPHRENIA AND COGNITION Koch, Elise Rosenthale, Brin Lundquist, Anders Chen, Chi-Hua Kauppi, Karolina Schizophr Bull Oral Session: Digital Health/Methods BACKGROUND: Cognitive impairments constitute a core feature of schizophrenia, and a genetic overlap between schizophrenia and cognitive functioning in healthy individuals has been identified. However, due to the high polygenicity and complex genetic architecture of both traits, overlapping biological pathways have not yet been identified between schizophrenia and normal cognitive ability. Network medicine offers a framework to study biologically meaningful gene networks through protein-protein interactions among risk genes. Here, established network-based methods were used to further reveal the biological relatedness of schizophrenia and cognition. METHODS: The protein interactome was used to examine the genetic link between schizophrenia risk genes and genes associated with cognitive performance in healthy individuals. First, we used a method called network separation to examine if there is an overlap between schizophrenia and cognition in the interactome network space. Then, we used network propagation analyses to identify schizophrenia risk genes that are close to cognition-associated genes in the interactome network space. Gene ontology and pathway enrichment analysis was performed to describe the function of this gene set. RESULTS: Network separation analyses showed a profound interactome overlap between schizophrenia risk genes and genes associated with cognitive performance (SAB = -0.22, z-score = -6.80, p = 5.38e-12). We identified 140 schizophrenia risk genes that are close to cognition-associated genes in the interactome. Risk genes close to cognition were enriched for pathways including long-term potentiation and Alzheimer’s disease, and included genes with a role in neurotransmitter systems implemented in cognition, such as glutamate and dopamine, that were not part of the direct genetic overlap. Moreover, schizophrenia risk genes close to cognition included 45 druggable genes not yet used as drug targets. DISCUSSION: These results pinpoint schizophrenia risk genes of particular interest for further examination in schizophrenia patient groups to reveal the genetic architecture of cognitive impairments in schizophrenia, of which some are druggable genes with potential as candidate targets for cognitive enhancing drugs. Oxford University Press 2020-05 2020-05-18 /pmc/articles/PMC7233998/ http://dx.doi.org/10.1093/schbul/sbaa028.064 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the Maryland Psychiatric Research Center. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Oral Session: Digital Health/Methods Koch, Elise Rosenthale, Brin Lundquist, Anders Chen, Chi-Hua Kauppi, Karolina O11.4. INTERACTOME OVERLAP BETWEEN SCHIZOPHRENIA AND COGNITION |
title | O11.4. INTERACTOME OVERLAP BETWEEN SCHIZOPHRENIA AND COGNITION |
title_full | O11.4. INTERACTOME OVERLAP BETWEEN SCHIZOPHRENIA AND COGNITION |
title_fullStr | O11.4. INTERACTOME OVERLAP BETWEEN SCHIZOPHRENIA AND COGNITION |
title_full_unstemmed | O11.4. INTERACTOME OVERLAP BETWEEN SCHIZOPHRENIA AND COGNITION |
title_short | O11.4. INTERACTOME OVERLAP BETWEEN SCHIZOPHRENIA AND COGNITION |
title_sort | o11.4. interactome overlap between schizophrenia and cognition |
topic | Oral Session: Digital Health/Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7233998/ http://dx.doi.org/10.1093/schbul/sbaa028.064 |
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