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Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site
BACKGROUND: Ferrovum spp. are abundant in acid mine drainage sites globally where they play an important role in biogeochemical cycling. All known taxa in this genus are Fe(II) oxidizers. Thus, co-occurring members of the genus could be competitors within the same environment. However, we found mult...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7236192/ https://www.ncbi.nlm.nih.gov/pubmed/32423375 http://dx.doi.org/10.1186/s12866-020-01768-w |
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author | Grettenberger, Christen L. Havig, Jeff R. Hamilton, Trinity L. |
author_facet | Grettenberger, Christen L. Havig, Jeff R. Hamilton, Trinity L. |
author_sort | Grettenberger, Christen L. |
collection | PubMed |
description | BACKGROUND: Ferrovum spp. are abundant in acid mine drainage sites globally where they play an important role in biogeochemical cycling. All known taxa in this genus are Fe(II) oxidizers. Thus, co-occurring members of the genus could be competitors within the same environment. However, we found multiple, co-occurring Ferrovum spp. in Cabin Branch, an acid mine drainage site in the Daniel Boone National Forest, KY. RESULTS: Here we describe the distribution of Ferrovum spp. within the Cabin Branch communities and metagenome assembled genomes (MAGs) of two new Ferrovum spp. In contrast to previous studies, we recovered multiple 16S rRNA gene sequence variants suggesting the commonly used 97% cutoff may not be appropriate to differentiate Ferrovum spp. We also retrieved two nearly-complete Ferrovum spp. genomes from metagenomic data. The genomes of these taxa differ in several key ways relating to nutrient cycling, motility, and chemotaxis. CONCLUSIONS: Previously reported Ferrovum genomes are also diverse with respect to these categories suggesting that the genus Ferrovum contains substantial metabolic diversity. This diversity likely explains how the members of this genus successfully co-occur in Cabin Branch and why Ferrovum spp. are abundant across geochemical gradients. |
format | Online Article Text |
id | pubmed-7236192 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-72361922020-05-27 Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site Grettenberger, Christen L. Havig, Jeff R. Hamilton, Trinity L. BMC Microbiol Research Article BACKGROUND: Ferrovum spp. are abundant in acid mine drainage sites globally where they play an important role in biogeochemical cycling. All known taxa in this genus are Fe(II) oxidizers. Thus, co-occurring members of the genus could be competitors within the same environment. However, we found multiple, co-occurring Ferrovum spp. in Cabin Branch, an acid mine drainage site in the Daniel Boone National Forest, KY. RESULTS: Here we describe the distribution of Ferrovum spp. within the Cabin Branch communities and metagenome assembled genomes (MAGs) of two new Ferrovum spp. In contrast to previous studies, we recovered multiple 16S rRNA gene sequence variants suggesting the commonly used 97% cutoff may not be appropriate to differentiate Ferrovum spp. We also retrieved two nearly-complete Ferrovum spp. genomes from metagenomic data. The genomes of these taxa differ in several key ways relating to nutrient cycling, motility, and chemotaxis. CONCLUSIONS: Previously reported Ferrovum genomes are also diverse with respect to these categories suggesting that the genus Ferrovum contains substantial metabolic diversity. This diversity likely explains how the members of this genus successfully co-occur in Cabin Branch and why Ferrovum spp. are abundant across geochemical gradients. BioMed Central 2020-05-18 /pmc/articles/PMC7236192/ /pubmed/32423375 http://dx.doi.org/10.1186/s12866-020-01768-w Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Grettenberger, Christen L. Havig, Jeff R. Hamilton, Trinity L. Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site |
title | Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site |
title_full | Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site |
title_fullStr | Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site |
title_full_unstemmed | Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site |
title_short | Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site |
title_sort | metabolic diversity and co-occurrence of multiple ferrovum species at an acid mine drainage site |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7236192/ https://www.ncbi.nlm.nih.gov/pubmed/32423375 http://dx.doi.org/10.1186/s12866-020-01768-w |
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