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Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis
The Sørensen-Dice index (SDI) is a widely used measure for evaluating medical image segmentation algorithms. It offers a standardized measure of segmentation accuracy which has proven useful. However, it offers diminishing insight when the number of objects is unknown, such as in white matter lesion...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7237671/ https://www.ncbi.nlm.nih.gov/pubmed/32427874 http://dx.doi.org/10.1038/s41598-020-64803-w |
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author | Carass, Aaron Roy, Snehashis Gherman, Adrian Reinhold, Jacob C. Jesson, Andrew Arbel, Tal Maier, Oskar Handels, Heinz Ghafoorian, Mohsen Platel, Bram Birenbaum, Ariel Greenspan, Hayit Pham, Dzung L. Crainiceanu, Ciprian M. Calabresi, Peter A. Prince, Jerry L. Roncal, William R. Gray Shinohara, Russell T. Oguz, Ipek |
author_facet | Carass, Aaron Roy, Snehashis Gherman, Adrian Reinhold, Jacob C. Jesson, Andrew Arbel, Tal Maier, Oskar Handels, Heinz Ghafoorian, Mohsen Platel, Bram Birenbaum, Ariel Greenspan, Hayit Pham, Dzung L. Crainiceanu, Ciprian M. Calabresi, Peter A. Prince, Jerry L. Roncal, William R. Gray Shinohara, Russell T. Oguz, Ipek |
author_sort | Carass, Aaron |
collection | PubMed |
description | The Sørensen-Dice index (SDI) is a widely used measure for evaluating medical image segmentation algorithms. It offers a standardized measure of segmentation accuracy which has proven useful. However, it offers diminishing insight when the number of objects is unknown, such as in white matter lesion segmentation of multiple sclerosis (MS) patients. We present a refinement for finer grained parsing of SDI results in situations where the number of objects is unknown. We explore these ideas with two case studies showing what can be learned from our two presented studies. Our first study explores an inter-rater comparison, showing that smaller lesions cannot be reliably identified. In our second case study, we demonstrate fusing multiple MS lesion segmentation algorithms based on the insights into the algorithms provided by our analysis to generate a segmentation that exhibits improved performance. This work demonstrates the wealth of information that can be learned from refined analysis of medical image segmentations. |
format | Online Article Text |
id | pubmed-7237671 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-72376712020-05-29 Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis Carass, Aaron Roy, Snehashis Gherman, Adrian Reinhold, Jacob C. Jesson, Andrew Arbel, Tal Maier, Oskar Handels, Heinz Ghafoorian, Mohsen Platel, Bram Birenbaum, Ariel Greenspan, Hayit Pham, Dzung L. Crainiceanu, Ciprian M. Calabresi, Peter A. Prince, Jerry L. Roncal, William R. Gray Shinohara, Russell T. Oguz, Ipek Sci Rep Article The Sørensen-Dice index (SDI) is a widely used measure for evaluating medical image segmentation algorithms. It offers a standardized measure of segmentation accuracy which has proven useful. However, it offers diminishing insight when the number of objects is unknown, such as in white matter lesion segmentation of multiple sclerosis (MS) patients. We present a refinement for finer grained parsing of SDI results in situations where the number of objects is unknown. We explore these ideas with two case studies showing what can be learned from our two presented studies. Our first study explores an inter-rater comparison, showing that smaller lesions cannot be reliably identified. In our second case study, we demonstrate fusing multiple MS lesion segmentation algorithms based on the insights into the algorithms provided by our analysis to generate a segmentation that exhibits improved performance. This work demonstrates the wealth of information that can be learned from refined analysis of medical image segmentations. Nature Publishing Group UK 2020-05-19 /pmc/articles/PMC7237671/ /pubmed/32427874 http://dx.doi.org/10.1038/s41598-020-64803-w Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Carass, Aaron Roy, Snehashis Gherman, Adrian Reinhold, Jacob C. Jesson, Andrew Arbel, Tal Maier, Oskar Handels, Heinz Ghafoorian, Mohsen Platel, Bram Birenbaum, Ariel Greenspan, Hayit Pham, Dzung L. Crainiceanu, Ciprian M. Calabresi, Peter A. Prince, Jerry L. Roncal, William R. Gray Shinohara, Russell T. Oguz, Ipek Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis |
title | Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis |
title_full | Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis |
title_fullStr | Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis |
title_full_unstemmed | Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis |
title_short | Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis |
title_sort | evaluating white matter lesion segmentations with refined sørensen-dice analysis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7237671/ https://www.ncbi.nlm.nih.gov/pubmed/32427874 http://dx.doi.org/10.1038/s41598-020-64803-w |
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