Cargando…

Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus

APETALA2/ethylene-responsive factor (AP2/ERF) is one of the largest transcription factor (TF) families in plants, which play important roles in regulating plant growth, development, and response to environmental stresses. Ammopiptanthus nanus, an unusual evergreen broad-leaved shrub in the arid regi...

Descripción completa

Detalles Bibliográficos
Autores principales: Cao, Shilin, Wang, Ying, Li, Xuting, Gao, Fei, Feng, Jinchao, Zhou, Yijun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7238250/
https://www.ncbi.nlm.nih.gov/pubmed/32260365
http://dx.doi.org/10.3390/plants9040455
_version_ 1783536502787014656
author Cao, Shilin
Wang, Ying
Li, Xuting
Gao, Fei
Feng, Jinchao
Zhou, Yijun
author_facet Cao, Shilin
Wang, Ying
Li, Xuting
Gao, Fei
Feng, Jinchao
Zhou, Yijun
author_sort Cao, Shilin
collection PubMed
description APETALA2/ethylene-responsive factor (AP2/ERF) is one of the largest transcription factor (TF) families in plants, which play important roles in regulating plant growth, development, and response to environmental stresses. Ammopiptanthus nanus, an unusual evergreen broad-leaved shrub in the arid region in the northern temperate zone, demonstrates a strong tolerance to low temperature and drought stresses, and AP2/ERF transcription factors may contribute to the stress tolerance of A. nanus. In the current study, 174 AP2/ERF family members were identified from the A. nanus genome, and they were divided into five subfamilies, including 92 ERF members, 55 dehydration-responsive element binding (DREB) members, 24 AP2 members, 2 RAV members, and 1 Soloist member. Compared with the other leguminous plants, A. nanus has more members of the DREB subfamily and the B1 group of the ERF subfamily, and gene expansion in the AP2/ERF family is primarily driven by tandem and segmental duplications. Promoter analysis showed that many stress-related cis-acting elements existed in promoter regions of the DREB genes, implying that MYB, ICE1, and WRKY transcription factors regulate the expression of DREB genes in A. nanus. Expression profiling revealed that the majority of DREB members were responsive to osmotic and cold stresses, and several DREB genes such as EVM0023336.1 and EVM0013392.1 were highly induced by cold stress, which may play important roles in cold response in A. nanus. This study provided important data for understanding the evolution and functions of AP2/ERF and DREB transcription factors in A. nanus.
format Online
Article
Text
id pubmed-7238250
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-72382502020-06-02 Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus Cao, Shilin Wang, Ying Li, Xuting Gao, Fei Feng, Jinchao Zhou, Yijun Plants (Basel) Article APETALA2/ethylene-responsive factor (AP2/ERF) is one of the largest transcription factor (TF) families in plants, which play important roles in regulating plant growth, development, and response to environmental stresses. Ammopiptanthus nanus, an unusual evergreen broad-leaved shrub in the arid region in the northern temperate zone, demonstrates a strong tolerance to low temperature and drought stresses, and AP2/ERF transcription factors may contribute to the stress tolerance of A. nanus. In the current study, 174 AP2/ERF family members were identified from the A. nanus genome, and they were divided into five subfamilies, including 92 ERF members, 55 dehydration-responsive element binding (DREB) members, 24 AP2 members, 2 RAV members, and 1 Soloist member. Compared with the other leguminous plants, A. nanus has more members of the DREB subfamily and the B1 group of the ERF subfamily, and gene expansion in the AP2/ERF family is primarily driven by tandem and segmental duplications. Promoter analysis showed that many stress-related cis-acting elements existed in promoter regions of the DREB genes, implying that MYB, ICE1, and WRKY transcription factors regulate the expression of DREB genes in A. nanus. Expression profiling revealed that the majority of DREB members were responsive to osmotic and cold stresses, and several DREB genes such as EVM0023336.1 and EVM0013392.1 were highly induced by cold stress, which may play important roles in cold response in A. nanus. This study provided important data for understanding the evolution and functions of AP2/ERF and DREB transcription factors in A. nanus. MDPI 2020-04-04 /pmc/articles/PMC7238250/ /pubmed/32260365 http://dx.doi.org/10.3390/plants9040455 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Cao, Shilin
Wang, Ying
Li, Xuting
Gao, Fei
Feng, Jinchao
Zhou, Yijun
Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus
title Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus
title_full Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus
title_fullStr Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus
title_full_unstemmed Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus
title_short Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus
title_sort characterization of the ap2/erf transcription factor family and expression profiling of dreb subfamily under cold and osmotic stresses in ammopiptanthus nanus
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7238250/
https://www.ncbi.nlm.nih.gov/pubmed/32260365
http://dx.doi.org/10.3390/plants9040455
work_keys_str_mv AT caoshilin characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus
AT wangying characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus
AT lixuting characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus
AT gaofei characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus
AT fengjinchao characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus
AT zhouyijun characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus