Cargando…
Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus
APETALA2/ethylene-responsive factor (AP2/ERF) is one of the largest transcription factor (TF) families in plants, which play important roles in regulating plant growth, development, and response to environmental stresses. Ammopiptanthus nanus, an unusual evergreen broad-leaved shrub in the arid regi...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7238250/ https://www.ncbi.nlm.nih.gov/pubmed/32260365 http://dx.doi.org/10.3390/plants9040455 |
_version_ | 1783536502787014656 |
---|---|
author | Cao, Shilin Wang, Ying Li, Xuting Gao, Fei Feng, Jinchao Zhou, Yijun |
author_facet | Cao, Shilin Wang, Ying Li, Xuting Gao, Fei Feng, Jinchao Zhou, Yijun |
author_sort | Cao, Shilin |
collection | PubMed |
description | APETALA2/ethylene-responsive factor (AP2/ERF) is one of the largest transcription factor (TF) families in plants, which play important roles in regulating plant growth, development, and response to environmental stresses. Ammopiptanthus nanus, an unusual evergreen broad-leaved shrub in the arid region in the northern temperate zone, demonstrates a strong tolerance to low temperature and drought stresses, and AP2/ERF transcription factors may contribute to the stress tolerance of A. nanus. In the current study, 174 AP2/ERF family members were identified from the A. nanus genome, and they were divided into five subfamilies, including 92 ERF members, 55 dehydration-responsive element binding (DREB) members, 24 AP2 members, 2 RAV members, and 1 Soloist member. Compared with the other leguminous plants, A. nanus has more members of the DREB subfamily and the B1 group of the ERF subfamily, and gene expansion in the AP2/ERF family is primarily driven by tandem and segmental duplications. Promoter analysis showed that many stress-related cis-acting elements existed in promoter regions of the DREB genes, implying that MYB, ICE1, and WRKY transcription factors regulate the expression of DREB genes in A. nanus. Expression profiling revealed that the majority of DREB members were responsive to osmotic and cold stresses, and several DREB genes such as EVM0023336.1 and EVM0013392.1 were highly induced by cold stress, which may play important roles in cold response in A. nanus. This study provided important data for understanding the evolution and functions of AP2/ERF and DREB transcription factors in A. nanus. |
format | Online Article Text |
id | pubmed-7238250 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-72382502020-06-02 Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus Cao, Shilin Wang, Ying Li, Xuting Gao, Fei Feng, Jinchao Zhou, Yijun Plants (Basel) Article APETALA2/ethylene-responsive factor (AP2/ERF) is one of the largest transcription factor (TF) families in plants, which play important roles in regulating plant growth, development, and response to environmental stresses. Ammopiptanthus nanus, an unusual evergreen broad-leaved shrub in the arid region in the northern temperate zone, demonstrates a strong tolerance to low temperature and drought stresses, and AP2/ERF transcription factors may contribute to the stress tolerance of A. nanus. In the current study, 174 AP2/ERF family members were identified from the A. nanus genome, and they were divided into five subfamilies, including 92 ERF members, 55 dehydration-responsive element binding (DREB) members, 24 AP2 members, 2 RAV members, and 1 Soloist member. Compared with the other leguminous plants, A. nanus has more members of the DREB subfamily and the B1 group of the ERF subfamily, and gene expansion in the AP2/ERF family is primarily driven by tandem and segmental duplications. Promoter analysis showed that many stress-related cis-acting elements existed in promoter regions of the DREB genes, implying that MYB, ICE1, and WRKY transcription factors regulate the expression of DREB genes in A. nanus. Expression profiling revealed that the majority of DREB members were responsive to osmotic and cold stresses, and several DREB genes such as EVM0023336.1 and EVM0013392.1 were highly induced by cold stress, which may play important roles in cold response in A. nanus. This study provided important data for understanding the evolution and functions of AP2/ERF and DREB transcription factors in A. nanus. MDPI 2020-04-04 /pmc/articles/PMC7238250/ /pubmed/32260365 http://dx.doi.org/10.3390/plants9040455 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Cao, Shilin Wang, Ying Li, Xuting Gao, Fei Feng, Jinchao Zhou, Yijun Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus |
title | Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus |
title_full | Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus |
title_fullStr | Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus |
title_full_unstemmed | Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus |
title_short | Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus |
title_sort | characterization of the ap2/erf transcription factor family and expression profiling of dreb subfamily under cold and osmotic stresses in ammopiptanthus nanus |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7238250/ https://www.ncbi.nlm.nih.gov/pubmed/32260365 http://dx.doi.org/10.3390/plants9040455 |
work_keys_str_mv | AT caoshilin characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus AT wangying characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus AT lixuting characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus AT gaofei characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus AT fengjinchao characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus AT zhouyijun characterizationoftheap2erftranscriptionfactorfamilyandexpressionprofilingofdrebsubfamilyundercoldandosmoticstressesinammopiptanthusnanus |