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Overwhelming mutations or SNPs of SARS-CoV-2: A point of caution

The morbidity of SARS-CoV-2 (COVID-19) is reaching 3 Million landmark causing and a serious public health concern globally and it is enigmatic how several antiviral and antibody treatments were not effective in the different period across the globe. With the drastic increasing number of positive cas...

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Autor principal: Vankadari, Naveen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7239005/
https://www.ncbi.nlm.nih.gov/pubmed/32445924
http://dx.doi.org/10.1016/j.gene.2020.144792
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author Vankadari, Naveen
author_facet Vankadari, Naveen
author_sort Vankadari, Naveen
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description The morbidity of SARS-CoV-2 (COVID-19) is reaching 3 Million landmark causing and a serious public health concern globally and it is enigmatic how several antiviral and antibody treatments were not effective in the different period across the globe. With the drastic increasing number of positive cases around the world WHO raised the importance in the assessment of the risk of spread and understanding genetic modifications that could have occurred in the SARS-CoV-2. Using all available deep sequencing data of complete genome from all over the world (NCBI repository), we identified several hundreds of point mutations or SNPs in SARS-CoV-2 all across the genome. This could be the cause for the constant change and differed virulence with an increase in mortality and morbidity. Among the 12 different countries (one sequence from each country) with complete genome sequencing data, we noted the 47 key point mutations or SNPs located along the entire genome that might have impact in the virulence and response to different antivirals against SARS-CoV-2. In this regard, key viral proteins of spike glycoprotein, Nsp1, RdRp and the ORF8 region got heavily mutated within these 3 months via person-to-person passage. We also discuss what could be the possible cause of this rapid mutation in the SARS-CoV-2.
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spelling pubmed-72390052020-05-20 Overwhelming mutations or SNPs of SARS-CoV-2: A point of caution Vankadari, Naveen Gene Article The morbidity of SARS-CoV-2 (COVID-19) is reaching 3 Million landmark causing and a serious public health concern globally and it is enigmatic how several antiviral and antibody treatments were not effective in the different period across the globe. With the drastic increasing number of positive cases around the world WHO raised the importance in the assessment of the risk of spread and understanding genetic modifications that could have occurred in the SARS-CoV-2. Using all available deep sequencing data of complete genome from all over the world (NCBI repository), we identified several hundreds of point mutations or SNPs in SARS-CoV-2 all across the genome. This could be the cause for the constant change and differed virulence with an increase in mortality and morbidity. Among the 12 different countries (one sequence from each country) with complete genome sequencing data, we noted the 47 key point mutations or SNPs located along the entire genome that might have impact in the virulence and response to different antivirals against SARS-CoV-2. In this regard, key viral proteins of spike glycoprotein, Nsp1, RdRp and the ORF8 region got heavily mutated within these 3 months via person-to-person passage. We also discuss what could be the possible cause of this rapid mutation in the SARS-CoV-2. Elsevier B.V. 2020-08-20 2020-05-20 /pmc/articles/PMC7239005/ /pubmed/32445924 http://dx.doi.org/10.1016/j.gene.2020.144792 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Vankadari, Naveen
Overwhelming mutations or SNPs of SARS-CoV-2: A point of caution
title Overwhelming mutations or SNPs of SARS-CoV-2: A point of caution
title_full Overwhelming mutations or SNPs of SARS-CoV-2: A point of caution
title_fullStr Overwhelming mutations or SNPs of SARS-CoV-2: A point of caution
title_full_unstemmed Overwhelming mutations or SNPs of SARS-CoV-2: A point of caution
title_short Overwhelming mutations or SNPs of SARS-CoV-2: A point of caution
title_sort overwhelming mutations or snps of sars-cov-2: a point of caution
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7239005/
https://www.ncbi.nlm.nih.gov/pubmed/32445924
http://dx.doi.org/10.1016/j.gene.2020.144792
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