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Automated detection of the head-twitch response using wavelet scalograms and a deep convolutional neural network
Hallucinogens induce the head-twitch response (HTR), a rapid reciprocal head movement, in mice. Although head twitches are usually identified by direct observation, they can also be assessed using a head-mounted magnet and a magnetometer. Procedures have been developed to automate the analysis of ma...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7239849/ https://www.ncbi.nlm.nih.gov/pubmed/32433580 http://dx.doi.org/10.1038/s41598-020-65264-x |
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author | Halberstadt, Adam L. |
author_facet | Halberstadt, Adam L. |
author_sort | Halberstadt, Adam L. |
collection | PubMed |
description | Hallucinogens induce the head-twitch response (HTR), a rapid reciprocal head movement, in mice. Although head twitches are usually identified by direct observation, they can also be assessed using a head-mounted magnet and a magnetometer. Procedures have been developed to automate the analysis of magnetometer recordings by detecting events that match the frequency, duration, and amplitude of the HTR. However, there is considerable variability in the features of head twitches, and behaviors such as jumping have similar characteristics, reducing the reliability of these methods. We have developed an automated method that can detect head twitches unambiguously, without relying on features in the amplitude-time domain. To detect the behavior, events are transformed into a visual representation in the time-frequency domain (a scalogram), deep features are extracted using the pretrained convolutional neural network (CNN) ResNet-50, and then the images are classified using a Support Vector Machine (SVM) algorithm. These procedures were used to analyze recordings from 237 mice containing 11,312 HTR. After transformation to scalograms, the multistage CNN-SVM approach detected 11,244 (99.4%) of the HTR. The procedures were insensitive to other behaviors, including jumping and seizures. Deep learning based on scalograms can be used to automate HTR detection with robust sensitivity and reliability. |
format | Online Article Text |
id | pubmed-7239849 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-72398492020-05-29 Automated detection of the head-twitch response using wavelet scalograms and a deep convolutional neural network Halberstadt, Adam L. Sci Rep Article Hallucinogens induce the head-twitch response (HTR), a rapid reciprocal head movement, in mice. Although head twitches are usually identified by direct observation, they can also be assessed using a head-mounted magnet and a magnetometer. Procedures have been developed to automate the analysis of magnetometer recordings by detecting events that match the frequency, duration, and amplitude of the HTR. However, there is considerable variability in the features of head twitches, and behaviors such as jumping have similar characteristics, reducing the reliability of these methods. We have developed an automated method that can detect head twitches unambiguously, without relying on features in the amplitude-time domain. To detect the behavior, events are transformed into a visual representation in the time-frequency domain (a scalogram), deep features are extracted using the pretrained convolutional neural network (CNN) ResNet-50, and then the images are classified using a Support Vector Machine (SVM) algorithm. These procedures were used to analyze recordings from 237 mice containing 11,312 HTR. After transformation to scalograms, the multistage CNN-SVM approach detected 11,244 (99.4%) of the HTR. The procedures were insensitive to other behaviors, including jumping and seizures. Deep learning based on scalograms can be used to automate HTR detection with robust sensitivity and reliability. Nature Publishing Group UK 2020-05-20 /pmc/articles/PMC7239849/ /pubmed/32433580 http://dx.doi.org/10.1038/s41598-020-65264-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Halberstadt, Adam L. Automated detection of the head-twitch response using wavelet scalograms and a deep convolutional neural network |
title | Automated detection of the head-twitch response using wavelet scalograms and a deep convolutional neural network |
title_full | Automated detection of the head-twitch response using wavelet scalograms and a deep convolutional neural network |
title_fullStr | Automated detection of the head-twitch response using wavelet scalograms and a deep convolutional neural network |
title_full_unstemmed | Automated detection of the head-twitch response using wavelet scalograms and a deep convolutional neural network |
title_short | Automated detection of the head-twitch response using wavelet scalograms and a deep convolutional neural network |
title_sort | automated detection of the head-twitch response using wavelet scalograms and a deep convolutional neural network |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7239849/ https://www.ncbi.nlm.nih.gov/pubmed/32433580 http://dx.doi.org/10.1038/s41598-020-65264-x |
work_keys_str_mv | AT halberstadtadaml automateddetectionoftheheadtwitchresponseusingwaveletscalogramsandadeepconvolutionalneuralnetwork |