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Application of information theory in systems biology
Over recent years, new light has been shed on aspects of information processing in cells. The quantification of information, as described by Shannon’s information theory, is a basic and powerful tool that can be applied to various fields, such as communication, statistics, and computer science, as w...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer Berlin Heidelberg
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7242537/ https://www.ncbi.nlm.nih.gov/pubmed/32144740 http://dx.doi.org/10.1007/s12551-020-00665-w |
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author | Uda, Shinsuke |
author_facet | Uda, Shinsuke |
author_sort | Uda, Shinsuke |
collection | PubMed |
description | Over recent years, new light has been shed on aspects of information processing in cells. The quantification of information, as described by Shannon’s information theory, is a basic and powerful tool that can be applied to various fields, such as communication, statistics, and computer science, as well as to information processing within cells. It has also been used to infer the network structure of molecular species. However, the difficulty of obtaining sufficient sample sizes and the computational burden associated with the high-dimensional data often encountered in biology can result in bottlenecks in the application of information theory to systems biology. This article provides an overview of the application of information theory to systems biology, discussing the associated bottlenecks and reviewing recent work. |
format | Online Article Text |
id | pubmed-7242537 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-72425372020-06-03 Application of information theory in systems biology Uda, Shinsuke Biophys Rev Review Over recent years, new light has been shed on aspects of information processing in cells. The quantification of information, as described by Shannon’s information theory, is a basic and powerful tool that can be applied to various fields, such as communication, statistics, and computer science, as well as to information processing within cells. It has also been used to infer the network structure of molecular species. However, the difficulty of obtaining sufficient sample sizes and the computational burden associated with the high-dimensional data often encountered in biology can result in bottlenecks in the application of information theory to systems biology. This article provides an overview of the application of information theory to systems biology, discussing the associated bottlenecks and reviewing recent work. Springer Berlin Heidelberg 2020-03-06 /pmc/articles/PMC7242537/ /pubmed/32144740 http://dx.doi.org/10.1007/s12551-020-00665-w Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Review Uda, Shinsuke Application of information theory in systems biology |
title | Application of information theory in systems biology |
title_full | Application of information theory in systems biology |
title_fullStr | Application of information theory in systems biology |
title_full_unstemmed | Application of information theory in systems biology |
title_short | Application of information theory in systems biology |
title_sort | application of information theory in systems biology |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7242537/ https://www.ncbi.nlm.nih.gov/pubmed/32144740 http://dx.doi.org/10.1007/s12551-020-00665-w |
work_keys_str_mv | AT udashinsuke applicationofinformationtheoryinsystemsbiology |