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Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content
Path analysis allows understanding the direct and indirect effects among traits. Multicollinearity in correlation matrices may cause a bias in path analysis estimates. This study aimed to: a) understand the correlation among soybean traits and estimate their direct and indirect effects on gain oil c...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7244132/ https://www.ncbi.nlm.nih.gov/pubmed/32442213 http://dx.doi.org/10.1371/journal.pone.0233290 |
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author | Viotto Del Conte, Murilo Carneiro, Pedro Crescêncio Souza Vilela de Resende, Marcos Deon Lopes da Silva, Felipe Peternelli, Luiz Alexandre |
author_facet | Viotto Del Conte, Murilo Carneiro, Pedro Crescêncio Souza Vilela de Resende, Marcos Deon Lopes da Silva, Felipe Peternelli, Luiz Alexandre |
author_sort | Viotto Del Conte, Murilo |
collection | PubMed |
description | Path analysis allows understanding the direct and indirect effects among traits. Multicollinearity in correlation matrices may cause a bias in path analysis estimates. This study aimed to: a) understand the correlation among soybean traits and estimate their direct and indirect effects on gain oil content; b) verify the efficiency of ridge path analysis and trait culling to overcome colinearity. Three different matrices with different levels of collinearity were obtained by trait culling. Ridge path analysis was performed on matrices with strong collinearity; otherwise, a traditional path analysis was performed. The same analyses were run on a simulated dataset. Trait culling was applied to matrix R originating the matrices R(1) and R(2). Path analysis for matrices R(1) and R(2) presented a high determination coefficient (0.856 and 0.832, respectively) and low effect of the residual variable (0.379 and 0.410 respectively). Ridge path analysis presented low determination coefficient (0.657) and no direct effects greater than the effects of the residual variable (0.585). Trait culling was more effective to overcome collinearity. Mass of grains, number of nodes, and number of pods are promising for indirect selection for oil content. |
format | Online Article Text |
id | pubmed-7244132 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-72441322020-06-03 Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content Viotto Del Conte, Murilo Carneiro, Pedro Crescêncio Souza Vilela de Resende, Marcos Deon Lopes da Silva, Felipe Peternelli, Luiz Alexandre PLoS One Research Article Path analysis allows understanding the direct and indirect effects among traits. Multicollinearity in correlation matrices may cause a bias in path analysis estimates. This study aimed to: a) understand the correlation among soybean traits and estimate their direct and indirect effects on gain oil content; b) verify the efficiency of ridge path analysis and trait culling to overcome colinearity. Three different matrices with different levels of collinearity were obtained by trait culling. Ridge path analysis was performed on matrices with strong collinearity; otherwise, a traditional path analysis was performed. The same analyses were run on a simulated dataset. Trait culling was applied to matrix R originating the matrices R(1) and R(2). Path analysis for matrices R(1) and R(2) presented a high determination coefficient (0.856 and 0.832, respectively) and low effect of the residual variable (0.379 and 0.410 respectively). Ridge path analysis presented low determination coefficient (0.657) and no direct effects greater than the effects of the residual variable (0.585). Trait culling was more effective to overcome collinearity. Mass of grains, number of nodes, and number of pods are promising for indirect selection for oil content. Public Library of Science 2020-05-22 /pmc/articles/PMC7244132/ /pubmed/32442213 http://dx.doi.org/10.1371/journal.pone.0233290 Text en © 2020 Viotto Del Conte et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Viotto Del Conte, Murilo Carneiro, Pedro Crescêncio Souza Vilela de Resende, Marcos Deon Lopes da Silva, Felipe Peternelli, Luiz Alexandre Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content |
title | Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content |
title_full | Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content |
title_fullStr | Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content |
title_full_unstemmed | Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content |
title_short | Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content |
title_sort | overcoming collinearity in path analysis of soybean [glycine max (l.) merr.] grain oil content |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7244132/ https://www.ncbi.nlm.nih.gov/pubmed/32442213 http://dx.doi.org/10.1371/journal.pone.0233290 |
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