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Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content

Path analysis allows understanding the direct and indirect effects among traits. Multicollinearity in correlation matrices may cause a bias in path analysis estimates. This study aimed to: a) understand the correlation among soybean traits and estimate their direct and indirect effects on gain oil c...

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Autores principales: Viotto Del Conte, Murilo, Carneiro, Pedro Crescêncio Souza, Vilela de Resende, Marcos Deon, Lopes da Silva, Felipe, Peternelli, Luiz Alexandre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7244132/
https://www.ncbi.nlm.nih.gov/pubmed/32442213
http://dx.doi.org/10.1371/journal.pone.0233290
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author Viotto Del Conte, Murilo
Carneiro, Pedro Crescêncio Souza
Vilela de Resende, Marcos Deon
Lopes da Silva, Felipe
Peternelli, Luiz Alexandre
author_facet Viotto Del Conte, Murilo
Carneiro, Pedro Crescêncio Souza
Vilela de Resende, Marcos Deon
Lopes da Silva, Felipe
Peternelli, Luiz Alexandre
author_sort Viotto Del Conte, Murilo
collection PubMed
description Path analysis allows understanding the direct and indirect effects among traits. Multicollinearity in correlation matrices may cause a bias in path analysis estimates. This study aimed to: a) understand the correlation among soybean traits and estimate their direct and indirect effects on gain oil content; b) verify the efficiency of ridge path analysis and trait culling to overcome colinearity. Three different matrices with different levels of collinearity were obtained by trait culling. Ridge path analysis was performed on matrices with strong collinearity; otherwise, a traditional path analysis was performed. The same analyses were run on a simulated dataset. Trait culling was applied to matrix R originating the matrices R(1) and R(2). Path analysis for matrices R(1) and R(2) presented a high determination coefficient (0.856 and 0.832, respectively) and low effect of the residual variable (0.379 and 0.410 respectively). Ridge path analysis presented low determination coefficient (0.657) and no direct effects greater than the effects of the residual variable (0.585). Trait culling was more effective to overcome collinearity. Mass of grains, number of nodes, and number of pods are promising for indirect selection for oil content.
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spelling pubmed-72441322020-06-03 Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content Viotto Del Conte, Murilo Carneiro, Pedro Crescêncio Souza Vilela de Resende, Marcos Deon Lopes da Silva, Felipe Peternelli, Luiz Alexandre PLoS One Research Article Path analysis allows understanding the direct and indirect effects among traits. Multicollinearity in correlation matrices may cause a bias in path analysis estimates. This study aimed to: a) understand the correlation among soybean traits and estimate their direct and indirect effects on gain oil content; b) verify the efficiency of ridge path analysis and trait culling to overcome colinearity. Three different matrices with different levels of collinearity were obtained by trait culling. Ridge path analysis was performed on matrices with strong collinearity; otherwise, a traditional path analysis was performed. The same analyses were run on a simulated dataset. Trait culling was applied to matrix R originating the matrices R(1) and R(2). Path analysis for matrices R(1) and R(2) presented a high determination coefficient (0.856 and 0.832, respectively) and low effect of the residual variable (0.379 and 0.410 respectively). Ridge path analysis presented low determination coefficient (0.657) and no direct effects greater than the effects of the residual variable (0.585). Trait culling was more effective to overcome collinearity. Mass of grains, number of nodes, and number of pods are promising for indirect selection for oil content. Public Library of Science 2020-05-22 /pmc/articles/PMC7244132/ /pubmed/32442213 http://dx.doi.org/10.1371/journal.pone.0233290 Text en © 2020 Viotto Del Conte et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Viotto Del Conte, Murilo
Carneiro, Pedro Crescêncio Souza
Vilela de Resende, Marcos Deon
Lopes da Silva, Felipe
Peternelli, Luiz Alexandre
Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content
title Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content
title_full Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content
title_fullStr Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content
title_full_unstemmed Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content
title_short Overcoming collinearity in path analysis of soybean [Glycine max (L.) Merr.] grain oil content
title_sort overcoming collinearity in path analysis of soybean [glycine max (l.) merr.] grain oil content
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7244132/
https://www.ncbi.nlm.nih.gov/pubmed/32442213
http://dx.doi.org/10.1371/journal.pone.0233290
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