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EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images
BACKGROUND: Automated pathology techniques for detecting cervical cancer at the premalignant stage have advantages for women in areas with limited medical resources. METHODS: This article presents EpithNet, a deep learning approach for the critical step of automated epithelium segmentation in digiti...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Wolters Kluwer - Medknow
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7245344/ https://www.ncbi.nlm.nih.gov/pubmed/32477616 http://dx.doi.org/10.4103/jpi.jpi_53_19 |
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author | Sornapudi, Sudhir Hagerty, Jason Stanley, R. Joe Stoecker, William V. Long, Rodney Antani, Sameer Thoma, George Zuna, Rosemary Frazier, Shellaine R. |
author_facet | Sornapudi, Sudhir Hagerty, Jason Stanley, R. Joe Stoecker, William V. Long, Rodney Antani, Sameer Thoma, George Zuna, Rosemary Frazier, Shellaine R. |
author_sort | Sornapudi, Sudhir |
collection | PubMed |
description | BACKGROUND: Automated pathology techniques for detecting cervical cancer at the premalignant stage have advantages for women in areas with limited medical resources. METHODS: This article presents EpithNet, a deep learning approach for the critical step of automated epithelium segmentation in digitized cervical histology images. EpithNet employs three regression networks of varying dimensions of image input blocks (patches) surrounding a given pixel, with all blocks at a fixed resolution, using varying network depth. RESULTS: The proposed model was evaluated on 311 digitized histology epithelial images and the results indicate that the technique maximizes region-based information to improve pixel-wise probability estimates. EpithNet-mc model, formed by intermediate concatenation of the convolutional layers of the three models, was observed to achieve 94% Jaccard index (intersection over union) which is 26.4% higher than the benchmark model. CONCLUSIONS: EpithNet yields better epithelial segmentation results than state-of-the-art benchmark methods. |
format | Online Article Text |
id | pubmed-7245344 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Wolters Kluwer - Medknow |
record_format | MEDLINE/PubMed |
spelling | pubmed-72453442020-05-29 EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images Sornapudi, Sudhir Hagerty, Jason Stanley, R. Joe Stoecker, William V. Long, Rodney Antani, Sameer Thoma, George Zuna, Rosemary Frazier, Shellaine R. J Pathol Inform Original Article BACKGROUND: Automated pathology techniques for detecting cervical cancer at the premalignant stage have advantages for women in areas with limited medical resources. METHODS: This article presents EpithNet, a deep learning approach for the critical step of automated epithelium segmentation in digitized cervical histology images. EpithNet employs three regression networks of varying dimensions of image input blocks (patches) surrounding a given pixel, with all blocks at a fixed resolution, using varying network depth. RESULTS: The proposed model was evaluated on 311 digitized histology epithelial images and the results indicate that the technique maximizes region-based information to improve pixel-wise probability estimates. EpithNet-mc model, formed by intermediate concatenation of the convolutional layers of the three models, was observed to achieve 94% Jaccard index (intersection over union) which is 26.4% higher than the benchmark model. CONCLUSIONS: EpithNet yields better epithelial segmentation results than state-of-the-art benchmark methods. Wolters Kluwer - Medknow 2020-03-30 /pmc/articles/PMC7245344/ /pubmed/32477616 http://dx.doi.org/10.4103/jpi.jpi_53_19 Text en Copyright: © 2020 Journal of Pathology Informatics http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms. |
spellingShingle | Original Article Sornapudi, Sudhir Hagerty, Jason Stanley, R. Joe Stoecker, William V. Long, Rodney Antani, Sameer Thoma, George Zuna, Rosemary Frazier, Shellaine R. EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images |
title | EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images |
title_full | EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images |
title_fullStr | EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images |
title_full_unstemmed | EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images |
title_short | EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images |
title_sort | epithnet: deep regression for epithelium segmentation in cervical histology images |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7245344/ https://www.ncbi.nlm.nih.gov/pubmed/32477616 http://dx.doi.org/10.4103/jpi.jpi_53_19 |
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