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EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images

BACKGROUND: Automated pathology techniques for detecting cervical cancer at the premalignant stage have advantages for women in areas with limited medical resources. METHODS: This article presents EpithNet, a deep learning approach for the critical step of automated epithelium segmentation in digiti...

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Autores principales: Sornapudi, Sudhir, Hagerty, Jason, Stanley, R. Joe, Stoecker, William V., Long, Rodney, Antani, Sameer, Thoma, George, Zuna, Rosemary, Frazier, Shellaine R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer - Medknow 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7245344/
https://www.ncbi.nlm.nih.gov/pubmed/32477616
http://dx.doi.org/10.4103/jpi.jpi_53_19
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author Sornapudi, Sudhir
Hagerty, Jason
Stanley, R. Joe
Stoecker, William V.
Long, Rodney
Antani, Sameer
Thoma, George
Zuna, Rosemary
Frazier, Shellaine R.
author_facet Sornapudi, Sudhir
Hagerty, Jason
Stanley, R. Joe
Stoecker, William V.
Long, Rodney
Antani, Sameer
Thoma, George
Zuna, Rosemary
Frazier, Shellaine R.
author_sort Sornapudi, Sudhir
collection PubMed
description BACKGROUND: Automated pathology techniques for detecting cervical cancer at the premalignant stage have advantages for women in areas with limited medical resources. METHODS: This article presents EpithNet, a deep learning approach for the critical step of automated epithelium segmentation in digitized cervical histology images. EpithNet employs three regression networks of varying dimensions of image input blocks (patches) surrounding a given pixel, with all blocks at a fixed resolution, using varying network depth. RESULTS: The proposed model was evaluated on 311 digitized histology epithelial images and the results indicate that the technique maximizes region-based information to improve pixel-wise probability estimates. EpithNet-mc model, formed by intermediate concatenation of the convolutional layers of the three models, was observed to achieve 94% Jaccard index (intersection over union) which is 26.4% higher than the benchmark model. CONCLUSIONS: EpithNet yields better epithelial segmentation results than state-of-the-art benchmark methods.
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spelling pubmed-72453442020-05-29 EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images Sornapudi, Sudhir Hagerty, Jason Stanley, R. Joe Stoecker, William V. Long, Rodney Antani, Sameer Thoma, George Zuna, Rosemary Frazier, Shellaine R. J Pathol Inform Original Article BACKGROUND: Automated pathology techniques for detecting cervical cancer at the premalignant stage have advantages for women in areas with limited medical resources. METHODS: This article presents EpithNet, a deep learning approach for the critical step of automated epithelium segmentation in digitized cervical histology images. EpithNet employs three regression networks of varying dimensions of image input blocks (patches) surrounding a given pixel, with all blocks at a fixed resolution, using varying network depth. RESULTS: The proposed model was evaluated on 311 digitized histology epithelial images and the results indicate that the technique maximizes region-based information to improve pixel-wise probability estimates. EpithNet-mc model, formed by intermediate concatenation of the convolutional layers of the three models, was observed to achieve 94% Jaccard index (intersection over union) which is 26.4% higher than the benchmark model. CONCLUSIONS: EpithNet yields better epithelial segmentation results than state-of-the-art benchmark methods. Wolters Kluwer - Medknow 2020-03-30 /pmc/articles/PMC7245344/ /pubmed/32477616 http://dx.doi.org/10.4103/jpi.jpi_53_19 Text en Copyright: © 2020 Journal of Pathology Informatics http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms.
spellingShingle Original Article
Sornapudi, Sudhir
Hagerty, Jason
Stanley, R. Joe
Stoecker, William V.
Long, Rodney
Antani, Sameer
Thoma, George
Zuna, Rosemary
Frazier, Shellaine R.
EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images
title EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images
title_full EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images
title_fullStr EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images
title_full_unstemmed EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images
title_short EpithNet: Deep Regression for Epithelium Segmentation in Cervical Histology Images
title_sort epithnet: deep regression for epithelium segmentation in cervical histology images
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7245344/
https://www.ncbi.nlm.nih.gov/pubmed/32477616
http://dx.doi.org/10.4103/jpi.jpi_53_19
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