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Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ
BACKGROUND: A prompt diagnosis of HIE remains a challenge clinically. This study aimed to identify potential biomarkers of neonatal hypoxic-ischemic encephalopathy (HIE) via a novel proteomic approach, the isobaric tags for absolute and relative quantification (iTRAQ) method. METHODS: Blood samples...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7245890/ https://www.ncbi.nlm.nih.gov/pubmed/32448169 http://dx.doi.org/10.1186/s13052-020-00822-7 |
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author | Zhu, Yuanyuan Yun, Yajing Jin, Meifang Li, Gen Li, Hong Miao, Po Ding, Xin Feng, Xing Xu, Lixiao Sun, Bin |
author_facet | Zhu, Yuanyuan Yun, Yajing Jin, Meifang Li, Gen Li, Hong Miao, Po Ding, Xin Feng, Xing Xu, Lixiao Sun, Bin |
author_sort | Zhu, Yuanyuan |
collection | PubMed |
description | BACKGROUND: A prompt diagnosis of HIE remains a challenge clinically. This study aimed to identify potential biomarkers of neonatal hypoxic-ischemic encephalopathy (HIE) via a novel proteomic approach, the isobaric tags for absolute and relative quantification (iTRAQ) method. METHODS: Blood samples were collected from neonates with mild (n = 4), moderate (n = 4), or severe (n = 4) HIE who were admitted to the neonatal intensive care unit of Children’s Hospital of Soochow University between Oct 2015 and Oct 2017. iTRAQ was performed in HIE patients and healthy controls (n = 4). Bioinformatics analyses including Gene Ontology and KEGG pathway enrichment analysis were performed to evaluate the potential features and capabilities of the identified differentially expressed proteins. RESULTS: A total of 51 commonly differentially expressed proteins were identified among the comparisons between mild, moderate, and severe HIE as well as healthy controls. Haptoglobin (HP) and S100A8 were most significantly up-regulated in patients with HIE and further validated via real-time PCR and western blotting. The differentially expressed proteins represented multiple biological processes, cellular components and molecular functions and were markedly enriched in complement and coagulation cascades. CONCLUSIONS: HP and S100A8 may serve as a potential biomarker for neonatal HIE and reflects the severity of HIE. The complement and coagulation cascades play crucial roles in the development of neonatal HIE. |
format | Online Article Text |
id | pubmed-7245890 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-72458902020-06-01 Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ Zhu, Yuanyuan Yun, Yajing Jin, Meifang Li, Gen Li, Hong Miao, Po Ding, Xin Feng, Xing Xu, Lixiao Sun, Bin Ital J Pediatr Research BACKGROUND: A prompt diagnosis of HIE remains a challenge clinically. This study aimed to identify potential biomarkers of neonatal hypoxic-ischemic encephalopathy (HIE) via a novel proteomic approach, the isobaric tags for absolute and relative quantification (iTRAQ) method. METHODS: Blood samples were collected from neonates with mild (n = 4), moderate (n = 4), or severe (n = 4) HIE who were admitted to the neonatal intensive care unit of Children’s Hospital of Soochow University between Oct 2015 and Oct 2017. iTRAQ was performed in HIE patients and healthy controls (n = 4). Bioinformatics analyses including Gene Ontology and KEGG pathway enrichment analysis were performed to evaluate the potential features and capabilities of the identified differentially expressed proteins. RESULTS: A total of 51 commonly differentially expressed proteins were identified among the comparisons between mild, moderate, and severe HIE as well as healthy controls. Haptoglobin (HP) and S100A8 were most significantly up-regulated in patients with HIE and further validated via real-time PCR and western blotting. The differentially expressed proteins represented multiple biological processes, cellular components and molecular functions and were markedly enriched in complement and coagulation cascades. CONCLUSIONS: HP and S100A8 may serve as a potential biomarker for neonatal HIE and reflects the severity of HIE. The complement and coagulation cascades play crucial roles in the development of neonatal HIE. BioMed Central 2020-05-24 /pmc/articles/PMC7245890/ /pubmed/32448169 http://dx.doi.org/10.1186/s13052-020-00822-7 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Zhu, Yuanyuan Yun, Yajing Jin, Meifang Li, Gen Li, Hong Miao, Po Ding, Xin Feng, Xing Xu, Lixiao Sun, Bin Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ |
title | Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ |
title_full | Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ |
title_fullStr | Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ |
title_full_unstemmed | Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ |
title_short | Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ |
title_sort | identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using itraq |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7245890/ https://www.ncbi.nlm.nih.gov/pubmed/32448169 http://dx.doi.org/10.1186/s13052-020-00822-7 |
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