Cargando…

Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ

BACKGROUND: A prompt diagnosis of HIE remains a challenge clinically. This study aimed to identify potential biomarkers of neonatal hypoxic-ischemic encephalopathy (HIE) via a novel proteomic approach, the isobaric tags for absolute and relative quantification (iTRAQ) method. METHODS: Blood samples...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhu, Yuanyuan, Yun, Yajing, Jin, Meifang, Li, Gen, Li, Hong, Miao, Po, Ding, Xin, Feng, Xing, Xu, Lixiao, Sun, Bin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7245890/
https://www.ncbi.nlm.nih.gov/pubmed/32448169
http://dx.doi.org/10.1186/s13052-020-00822-7
_version_ 1783537839642771456
author Zhu, Yuanyuan
Yun, Yajing
Jin, Meifang
Li, Gen
Li, Hong
Miao, Po
Ding, Xin
Feng, Xing
Xu, Lixiao
Sun, Bin
author_facet Zhu, Yuanyuan
Yun, Yajing
Jin, Meifang
Li, Gen
Li, Hong
Miao, Po
Ding, Xin
Feng, Xing
Xu, Lixiao
Sun, Bin
author_sort Zhu, Yuanyuan
collection PubMed
description BACKGROUND: A prompt diagnosis of HIE remains a challenge clinically. This study aimed to identify potential biomarkers of neonatal hypoxic-ischemic encephalopathy (HIE) via a novel proteomic approach, the isobaric tags for absolute and relative quantification (iTRAQ) method. METHODS: Blood samples were collected from neonates with mild (n = 4), moderate (n = 4), or severe (n = 4) HIE who were admitted to the neonatal intensive care unit of Children’s Hospital of Soochow University between Oct 2015 and Oct 2017. iTRAQ was performed in HIE patients and healthy controls (n = 4). Bioinformatics analyses including Gene Ontology and KEGG pathway enrichment analysis were performed to evaluate the potential features and capabilities of the identified differentially expressed proteins. RESULTS: A total of 51 commonly differentially expressed proteins were identified among the comparisons between mild, moderate, and severe HIE as well as healthy controls. Haptoglobin (HP) and S100A8 were most significantly up-regulated in patients with HIE and further validated via real-time PCR and western blotting. The differentially expressed proteins represented multiple biological processes, cellular components and molecular functions and were markedly enriched in complement and coagulation cascades. CONCLUSIONS: HP and S100A8 may serve as a potential biomarker for neonatal HIE and reflects the severity of HIE. The complement and coagulation cascades play crucial roles in the development of neonatal HIE.
format Online
Article
Text
id pubmed-7245890
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-72458902020-06-01 Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ Zhu, Yuanyuan Yun, Yajing Jin, Meifang Li, Gen Li, Hong Miao, Po Ding, Xin Feng, Xing Xu, Lixiao Sun, Bin Ital J Pediatr Research BACKGROUND: A prompt diagnosis of HIE remains a challenge clinically. This study aimed to identify potential biomarkers of neonatal hypoxic-ischemic encephalopathy (HIE) via a novel proteomic approach, the isobaric tags for absolute and relative quantification (iTRAQ) method. METHODS: Blood samples were collected from neonates with mild (n = 4), moderate (n = 4), or severe (n = 4) HIE who were admitted to the neonatal intensive care unit of Children’s Hospital of Soochow University between Oct 2015 and Oct 2017. iTRAQ was performed in HIE patients and healthy controls (n = 4). Bioinformatics analyses including Gene Ontology and KEGG pathway enrichment analysis were performed to evaluate the potential features and capabilities of the identified differentially expressed proteins. RESULTS: A total of 51 commonly differentially expressed proteins were identified among the comparisons between mild, moderate, and severe HIE as well as healthy controls. Haptoglobin (HP) and S100A8 were most significantly up-regulated in patients with HIE and further validated via real-time PCR and western blotting. The differentially expressed proteins represented multiple biological processes, cellular components and molecular functions and were markedly enriched in complement and coagulation cascades. CONCLUSIONS: HP and S100A8 may serve as a potential biomarker for neonatal HIE and reflects the severity of HIE. The complement and coagulation cascades play crucial roles in the development of neonatal HIE. BioMed Central 2020-05-24 /pmc/articles/PMC7245890/ /pubmed/32448169 http://dx.doi.org/10.1186/s13052-020-00822-7 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Zhu, Yuanyuan
Yun, Yajing
Jin, Meifang
Li, Gen
Li, Hong
Miao, Po
Ding, Xin
Feng, Xing
Xu, Lixiao
Sun, Bin
Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ
title Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ
title_full Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ
title_fullStr Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ
title_full_unstemmed Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ
title_short Identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using iTRAQ
title_sort identification of novel biomarkers for neonatal hypoxic-ischemic encephalopathy using itraq
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7245890/
https://www.ncbi.nlm.nih.gov/pubmed/32448169
http://dx.doi.org/10.1186/s13052-020-00822-7
work_keys_str_mv AT zhuyuanyuan identificationofnovelbiomarkersforneonatalhypoxicischemicencephalopathyusingitraq
AT yunyajing identificationofnovelbiomarkersforneonatalhypoxicischemicencephalopathyusingitraq
AT jinmeifang identificationofnovelbiomarkersforneonatalhypoxicischemicencephalopathyusingitraq
AT ligen identificationofnovelbiomarkersforneonatalhypoxicischemicencephalopathyusingitraq
AT lihong identificationofnovelbiomarkersforneonatalhypoxicischemicencephalopathyusingitraq
AT miaopo identificationofnovelbiomarkersforneonatalhypoxicischemicencephalopathyusingitraq
AT dingxin identificationofnovelbiomarkersforneonatalhypoxicischemicencephalopathyusingitraq
AT fengxing identificationofnovelbiomarkersforneonatalhypoxicischemicencephalopathyusingitraq
AT xulixiao identificationofnovelbiomarkersforneonatalhypoxicischemicencephalopathyusingitraq
AT sunbin identificationofnovelbiomarkersforneonatalhypoxicischemicencephalopathyusingitraq