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Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells

It is known that single or isolated tumor cells enter cancer patients’ circulatory systems. These circulating tumor cells (CTCs) are thought to be an effective tool for diagnosing cancer malignancy. However, handling CTC samples and evaluating CTC sequence analysis results are challenging. Recently,...

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Autores principales: Yanagisawa, Kiminori, Toratani, Masayasu, Asai, Ayumu, Konno, Masamitsu, Niioka, Hirohiko, Mizushima, Tsunekazu, Satoh, Taroh, Miyake, Jun, Ogawa, Kazuhiko, Vecchione, Andrea, Doki, Yuichiro, Eguchi, Hidetoshi, Ishii, Hideshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7246790/
https://www.ncbi.nlm.nih.gov/pubmed/32365822
http://dx.doi.org/10.3390/ijms21093166
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author Yanagisawa, Kiminori
Toratani, Masayasu
Asai, Ayumu
Konno, Masamitsu
Niioka, Hirohiko
Mizushima, Tsunekazu
Satoh, Taroh
Miyake, Jun
Ogawa, Kazuhiko
Vecchione, Andrea
Doki, Yuichiro
Eguchi, Hidetoshi
Ishii, Hideshi
author_facet Yanagisawa, Kiminori
Toratani, Masayasu
Asai, Ayumu
Konno, Masamitsu
Niioka, Hirohiko
Mizushima, Tsunekazu
Satoh, Taroh
Miyake, Jun
Ogawa, Kazuhiko
Vecchione, Andrea
Doki, Yuichiro
Eguchi, Hidetoshi
Ishii, Hideshi
author_sort Yanagisawa, Kiminori
collection PubMed
description It is known that single or isolated tumor cells enter cancer patients’ circulatory systems. These circulating tumor cells (CTCs) are thought to be an effective tool for diagnosing cancer malignancy. However, handling CTC samples and evaluating CTC sequence analysis results are challenging. Recently, the convolutional neural network (CNN) model, a type of deep learning model, has been increasingly adopted for medical image analyses. However, it is controversial whether cell characteristics can be identified at the single-cell level by using machine learning methods. This study intends to verify whether an AI system could classify the sensitivity of anticancer drugs, based on cell morphology during culture. We constructed a CNN based on the VGG16 model that could predict the efficiency of antitumor drugs at the single-cell level. The machine learning revealed that our model could identify the effects of antitumor drugs with ~0.80 accuracies. Our results show that, in the future, realizing precision medicine to identify effective antitumor drugs for individual patients may be possible by extracting CTCs from blood and performing classification by using an AI system.
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spelling pubmed-72467902020-06-10 Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells Yanagisawa, Kiminori Toratani, Masayasu Asai, Ayumu Konno, Masamitsu Niioka, Hirohiko Mizushima, Tsunekazu Satoh, Taroh Miyake, Jun Ogawa, Kazuhiko Vecchione, Andrea Doki, Yuichiro Eguchi, Hidetoshi Ishii, Hideshi Int J Mol Sci Article It is known that single or isolated tumor cells enter cancer patients’ circulatory systems. These circulating tumor cells (CTCs) are thought to be an effective tool for diagnosing cancer malignancy. However, handling CTC samples and evaluating CTC sequence analysis results are challenging. Recently, the convolutional neural network (CNN) model, a type of deep learning model, has been increasingly adopted for medical image analyses. However, it is controversial whether cell characteristics can be identified at the single-cell level by using machine learning methods. This study intends to verify whether an AI system could classify the sensitivity of anticancer drugs, based on cell morphology during culture. We constructed a CNN based on the VGG16 model that could predict the efficiency of antitumor drugs at the single-cell level. The machine learning revealed that our model could identify the effects of antitumor drugs with ~0.80 accuracies. Our results show that, in the future, realizing precision medicine to identify effective antitumor drugs for individual patients may be possible by extracting CTCs from blood and performing classification by using an AI system. MDPI 2020-04-30 /pmc/articles/PMC7246790/ /pubmed/32365822 http://dx.doi.org/10.3390/ijms21093166 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yanagisawa, Kiminori
Toratani, Masayasu
Asai, Ayumu
Konno, Masamitsu
Niioka, Hirohiko
Mizushima, Tsunekazu
Satoh, Taroh
Miyake, Jun
Ogawa, Kazuhiko
Vecchione, Andrea
Doki, Yuichiro
Eguchi, Hidetoshi
Ishii, Hideshi
Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells
title Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells
title_full Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells
title_fullStr Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells
title_full_unstemmed Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells
title_short Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells
title_sort convolutional neural network can recognize drug resistance of single cancer cells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7246790/
https://www.ncbi.nlm.nih.gov/pubmed/32365822
http://dx.doi.org/10.3390/ijms21093166
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