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Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer
Immune-related genes (IRGs) play regulatory roles in the immune system and are involved in the initiation and progression of colon cancer. This study aimed to develop an immunogenomic risk score for predicting survival outcomes among colon cancer patients. We analyzed the expressions of IRGs in colo...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7253627/ https://www.ncbi.nlm.nih.gov/pubmed/32508884 http://dx.doi.org/10.3389/fgene.2020.00499 |
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author | Zhang, Han Qin, Chuan Gan, Hua Guo, Xiong Zhang, Li |
author_facet | Zhang, Han Qin, Chuan Gan, Hua Guo, Xiong Zhang, Li |
author_sort | Zhang, Han |
collection | PubMed |
description | Immune-related genes (IRGs) play regulatory roles in the immune system and are involved in the initiation and progression of colon cancer. This study aimed to develop an immunogenomic risk score for predicting survival outcomes among colon cancer patients. We analyzed the expressions of IRGs in colon specimens and discovered 484 differentially expressed IRGs when we compared specimens from colon cancer and adjacent normal tissue. Univariate Cox regression analyses were performed to identify 26 IRGs that were associated with survival. A Cox proportional hazards model with a lasso penalty identified five optimal IRGs for constructing the immunogenomic risk score (CD1B, XCL1, PLCG2, NGF, and OXTR). The risk score had good performance in predicting overall survival among patients with colon cancer and was correlated with the amount of tumor-infiltrating immune cells. Our findings suggest that the immunogenomic risk score may be useful for prognostication in colon cancer cases. Furthermore, the five IRGs included in the risk score might be useful targets for investigating the initiation of colon cancer and designing personalized treatments. |
format | Online Article Text |
id | pubmed-7253627 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-72536272020-06-05 Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer Zhang, Han Qin, Chuan Gan, Hua Guo, Xiong Zhang, Li Front Genet Genetics Immune-related genes (IRGs) play regulatory roles in the immune system and are involved in the initiation and progression of colon cancer. This study aimed to develop an immunogenomic risk score for predicting survival outcomes among colon cancer patients. We analyzed the expressions of IRGs in colon specimens and discovered 484 differentially expressed IRGs when we compared specimens from colon cancer and adjacent normal tissue. Univariate Cox regression analyses were performed to identify 26 IRGs that were associated with survival. A Cox proportional hazards model with a lasso penalty identified five optimal IRGs for constructing the immunogenomic risk score (CD1B, XCL1, PLCG2, NGF, and OXTR). The risk score had good performance in predicting overall survival among patients with colon cancer and was correlated with the amount of tumor-infiltrating immune cells. Our findings suggest that the immunogenomic risk score may be useful for prognostication in colon cancer cases. Furthermore, the five IRGs included in the risk score might be useful targets for investigating the initiation of colon cancer and designing personalized treatments. Frontiers Media S.A. 2020-05-21 /pmc/articles/PMC7253627/ /pubmed/32508884 http://dx.doi.org/10.3389/fgene.2020.00499 Text en Copyright © 2020 Zhang, Qin, Gan, Guo and Zhang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Zhang, Han Qin, Chuan Gan, Hua Guo, Xiong Zhang, Li Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer |
title | Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer |
title_full | Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer |
title_fullStr | Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer |
title_full_unstemmed | Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer |
title_short | Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer |
title_sort | construction of an immunogenomic risk score for prognostication in colon cancer |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7253627/ https://www.ncbi.nlm.nih.gov/pubmed/32508884 http://dx.doi.org/10.3389/fgene.2020.00499 |
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