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Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer

Immune-related genes (IRGs) play regulatory roles in the immune system and are involved in the initiation and progression of colon cancer. This study aimed to develop an immunogenomic risk score for predicting survival outcomes among colon cancer patients. We analyzed the expressions of IRGs in colo...

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Detalles Bibliográficos
Autores principales: Zhang, Han, Qin, Chuan, Gan, Hua, Guo, Xiong, Zhang, Li
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7253627/
https://www.ncbi.nlm.nih.gov/pubmed/32508884
http://dx.doi.org/10.3389/fgene.2020.00499
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author Zhang, Han
Qin, Chuan
Gan, Hua
Guo, Xiong
Zhang, Li
author_facet Zhang, Han
Qin, Chuan
Gan, Hua
Guo, Xiong
Zhang, Li
author_sort Zhang, Han
collection PubMed
description Immune-related genes (IRGs) play regulatory roles in the immune system and are involved in the initiation and progression of colon cancer. This study aimed to develop an immunogenomic risk score for predicting survival outcomes among colon cancer patients. We analyzed the expressions of IRGs in colon specimens and discovered 484 differentially expressed IRGs when we compared specimens from colon cancer and adjacent normal tissue. Univariate Cox regression analyses were performed to identify 26 IRGs that were associated with survival. A Cox proportional hazards model with a lasso penalty identified five optimal IRGs for constructing the immunogenomic risk score (CD1B, XCL1, PLCG2, NGF, and OXTR). The risk score had good performance in predicting overall survival among patients with colon cancer and was correlated with the amount of tumor-infiltrating immune cells. Our findings suggest that the immunogenomic risk score may be useful for prognostication in colon cancer cases. Furthermore, the five IRGs included in the risk score might be useful targets for investigating the initiation of colon cancer and designing personalized treatments.
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spelling pubmed-72536272020-06-05 Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer Zhang, Han Qin, Chuan Gan, Hua Guo, Xiong Zhang, Li Front Genet Genetics Immune-related genes (IRGs) play regulatory roles in the immune system and are involved in the initiation and progression of colon cancer. This study aimed to develop an immunogenomic risk score for predicting survival outcomes among colon cancer patients. We analyzed the expressions of IRGs in colon specimens and discovered 484 differentially expressed IRGs when we compared specimens from colon cancer and adjacent normal tissue. Univariate Cox regression analyses were performed to identify 26 IRGs that were associated with survival. A Cox proportional hazards model with a lasso penalty identified five optimal IRGs for constructing the immunogenomic risk score (CD1B, XCL1, PLCG2, NGF, and OXTR). The risk score had good performance in predicting overall survival among patients with colon cancer and was correlated with the amount of tumor-infiltrating immune cells. Our findings suggest that the immunogenomic risk score may be useful for prognostication in colon cancer cases. Furthermore, the five IRGs included in the risk score might be useful targets for investigating the initiation of colon cancer and designing personalized treatments. Frontiers Media S.A. 2020-05-21 /pmc/articles/PMC7253627/ /pubmed/32508884 http://dx.doi.org/10.3389/fgene.2020.00499 Text en Copyright © 2020 Zhang, Qin, Gan, Guo and Zhang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zhang, Han
Qin, Chuan
Gan, Hua
Guo, Xiong
Zhang, Li
Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer
title Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer
title_full Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer
title_fullStr Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer
title_full_unstemmed Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer
title_short Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer
title_sort construction of an immunogenomic risk score for prognostication in colon cancer
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7253627/
https://www.ncbi.nlm.nih.gov/pubmed/32508884
http://dx.doi.org/10.3389/fgene.2020.00499
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