Cargando…

An Optimized Metabarcoding Method for Mimiviridae

Mimiviridae is a group of viruses with large genomes and virions. Ecological relevance of Mimiviridae in marine environments has been increasingly recognized through the discoveries of novel isolates and metagenomic studies. To facilitate ecological profiling of Mimiviridae, we previously proposed a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Prodinger, Florian, Endo, Hisashi, Gotoh, Yasuhiro, Li, Yanze, Morimoto, Daichi, Omae, Kimiho, Tominaga, Kento, Blanc-Mathieu, Romain, Takano, Yoshihito, Hayashi, Tetsuya, Nagasaki, Keizo, Yoshida, Takashi, Ogata, Hiroyuki
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7254495/ https://www.ncbi.nlm.nih.gov/pubmed/32252306 http://dx.doi.org/10.3390/microorganisms8040506

Ejemplares similares

The Earth Is Small for “Leviathans”: Long Distance Dispersal of Giant Viruses across Aquatic Environments
por: Li, Yanze, et al.
Publicado: (2019)

Zamilon, a Novel Virophage with Mimiviridae Host Specificity
por: Gaia, Morgan, et al.
Publicado: (2014)

In silico Prediction of Virus-Host Interactions for Marine Bacteroidetes With the Use of Metagenome-Assembled Genomes
por: Tominaga, Kento, et al.
Publicado: (2020)

Visualization of a Dinoflagellate-Infecting Virus HcDNAV and Its Infection Process
por: Takano, Yoshihito, et al.
Publicado: (2018)

Mimiviridae, Marseilleviridae, and virophages as emerging human pathogens causing healthcare-associated infections
por: Kutikhin, Anton G., et al.
Publicado: (2014)

Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan
por: Yoshida, Koki, et al.
Publicado: (2021)

Broad Spectrum of Mimiviridae Virophage Allows Its Isolation Using a Mimivirus Reporter
por: Gaia, Morgan, et al.
Publicado: (2013)

Lateral Gene Transfer Between Protozoa-Related Giant Viruses of Family Mimiviridae and Chlamydiae
por: Watanabe, Takanori, et al.
Publicado: (2018)

A Functional K(+) Channel from Tetraselmis Virus 1, a Member of the Mimiviridae
por: Kukovetz, Kerri, et al.
Publicado: (2020)

Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world
por: Jeudy, Sandra, et al.
Publicado: (2019)

Structural and Phylogenetic Diversity of Anaerobic Carbon-Monoxide Dehydrogenases
por: Inoue, Masao, et al.
Publicado: (2019)

Mimiviridae: clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family
por: Yutin, Natalya, et al.
Publicado: (2013)

Evolution and Phylogeny of Large DNA Viruses, Mimiviridae and Phycodnaviridae Including Newly Characterized Heterosigma akashiwo Virus
por: Maruyama, Fumito, et al.
Publicado: (2016)

First Isolation of a Giant Virus from Wild Hirudo medicinalis Leech: Mimiviridae isolation in Hirudo medicinalis
por: Boughalmi, Mondher, et al.
Publicado: (2013)

Ecological Structuring of Temperate Bacteriophages in the Inflammatory Bowel Disease-Affected Gut
por: Nishiyama, Hiroki, et al.
Publicado: (2020)

Transcriptome analysis of a thermophilic and hydrogenogenic carboxydotroph Carboxydothermus pertinax
por: Fukuyama, Yuto, et al.
Publicado: (2019)

Diversity in Infection Specificity between the Bloom-forming Microalga Heterosigma akashiwo and Its dsDNA Virus, Heterosigma akashiwo Virus
por: Funaoka, Yusaku, et al.
Publicado: (2023)

Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean
por: Nishimura, Yosuke, et al.
Publicado: (2017)

Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters
por: Li, Yanze, et al.
Publicado: (2018)

New PCR primers for metabarcoding environmental DNA from freshwater eels, genus Anguilla
por: Takeuchi, Aya, et al.
Publicado: (2019)

Mimiviridae: An Expanding Family of Highly Diverse Large dsDNA Viruses Infecting a Wide Phylogenetic Range of Aquatic Eukaryotes
por: Claverie, Jean-Michel, et al.
Publicado: (2018)

Draft Genome Sequences of Carboxydothermus pertinax and C. islandicus, Hydrogenogenic Carboxydotrophic Bacteria
por: Fukuyama, Yuto, et al.
Publicado: (2017)

Diversity and distribution of thermophilic hydrogenogenic carboxydotrophs revealed by microbial community analysis in sediments from multiple hydrothermal environments in Japan
por: Omae, Kimiho, et al.
Publicado: (2019)

Draft Genome Sequences of Two Thermophilic Moorella sp. Strains, Isolated from an Acidic Hot Spring in Japan
por: Fukuyama, Yuto, et al.
Publicado: (2019)

Draft Genome Sequences of Two Hydrogenogenic Carboxydotrophic Bacteria, Carboxydocella sp. Strains JDF658 and ULO1, Isolated from Two Distinct Volcanic Fronts in Japan
por: Fukuyama, Yuto, et al.
Publicado: (2017)

Carbon monoxide-dependent transcriptional changes in a thermophilic, carbon monoxide-utilizing, hydrogen-evolving bacterium Calderihabitans maritimus KKC1 revealed by transcriptomic analysis
por: Inoue, Masao, et al.
Publicado: (2020)

Biome-specific distribution of Ni-containing carbon monoxide dehydrogenases
por: Inoue, Masao, et al.
Publicado: (2022)

Diversity analysis of thermophilic hydrogenogenic carboxydotrophs by carbon monoxide dehydrogenase amplicon sequencing using new primers
por: Omae, Kimiho, et al.
Publicado: (2021)

Related Giant Viruses in Distant Locations and Different Habitats: Acanthamoeba polyphaga moumouvirus Represents a Third Lineage of the Mimiviridae That Is Close to the Megavirus Lineage
por: Yoosuf, Niyaz, et al.
Publicado: (2012)

KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
por: Aramaki, Takuya, et al.
Publicado: (2020)

Quantitative Assessment of Nucleocytoplasmic Large DNA Virus and Host Interactions Predicted by Co-occurrence Analyses
por: Meng, Lingjie, et al.
Publicado: (2021)

Xanthomonas citri jumbo phage XacN1 exhibits a wide host range and high complement of tRNA genes
por: Yoshikawa, Genki, et al.
Publicado: (2018)

Draft Genome Sequences of Five Rapidly Growing Mycobacterium Species, M. thermoresistibile, M. fortuitum subsp. acetamidolyticum, M. canariasense, M. brisbanense, and M. novocastrense
por: Katahira, Katsuyuki, et al.
Publicado: (2016)

Prophages integrating into prophages: A mechanism to accumulate type III secretion effector genes and duplicate Shiga toxin-encoding prophages in Escherichia coli
por: Nakamura, Keiji, et al.
Publicado: (2021)

DNA reference libraries of French Guianese mosquitoes for barcoding and metabarcoding
por: Talaga, Stanislas, et al.
Publicado: (2017)

Strong primer bias for Tulasnellaceae fungi in metabarcoding: Specific primers improve the characterization of the mycorrhizal communities of epiphytic orchids
por: Rammitsu, Kento, et al.
Publicado: (2021)

Bypass surgery for ruptured dissecting aneurysms of the proximal posterior cerebral artery: illustrative case
por: Hayashi, Tetsuya, et al.
Publicado: (2022)

Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs
por: Hayami, Kana, et al.
Publicado: (2020)

Cyanophage Infection in the Bloom-Forming Cyanobacteria Microcystis aeruginosa in Surface Freshwater
por: Yoshida-Takashima, Yukari, et al.
Publicado: (2012)

An Illumina metabarcoding pipeline for fungi
por: Bálint, Miklós, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_ff63t8cutm6tfia16a50kpov8p