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Comprehensive analysis of T-cell receptor repertoire in patients with acute coronary syndrome by high-throughput sequencing
BACKGROUND: This study aims to investigate the T-cell receptor (TCR) repertoire in patients with acute coronary syndrome (ACS). METHODS: The TCR repertoires of 9 unstable angina patients (UA), 14 acute myocardial infarction patients (AMI) and 9 normal coronary artery (NCA) patients were profiled usi...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7254720/ https://www.ncbi.nlm.nih.gov/pubmed/32460698 http://dx.doi.org/10.1186/s12872-020-01538-6 |
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author | Liu, Sudong Zhong, Zhixiong Zhong, Wei Weng, Ruiqiang Liu, Jing Gu, Xiaodong Chen, Yongyu |
author_facet | Liu, Sudong Zhong, Zhixiong Zhong, Wei Weng, Ruiqiang Liu, Jing Gu, Xiaodong Chen, Yongyu |
author_sort | Liu, Sudong |
collection | PubMed |
description | BACKGROUND: This study aims to investigate the T-cell receptor (TCR) repertoire in patients with acute coronary syndrome (ACS). METHODS: The TCR repertoires of 9 unstable angina patients (UA), 14 acute myocardial infarction patients (AMI) and 9 normal coronary artery (NCA) patients were profiled using high-throughput sequencing (HTS). The clonal diversity of the TCR repertoires in different groups was analyzed, as well as the frequencies of variable (V), diversity (D) and joining(J) gene segments. RESULTS: ACS patients including UA and AMI, showed reduced TCRβ diversity than NCA patients. ACS patients presented higher levels of clonal expansion. The clonotype overlap of complementarity determining region 3(CDR3) was significantly varied between different groups. A total of 10 V genes and 1 J gene were differently utilized between ACS and NCA patients. We identified some shared CDR3 amino acid sequences that were presented in ACS but not in NCA patients. CONCLUSIONS: This study revealed the distinct TCR repertoires in patients with ACS and demonstrated the presence of disease associated T-cell clonotypes. These findings suggested a role of T cells in ACS and provided a new way to explore the mechanisms of ACS. |
format | Online Article Text |
id | pubmed-7254720 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-72547202020-06-07 Comprehensive analysis of T-cell receptor repertoire in patients with acute coronary syndrome by high-throughput sequencing Liu, Sudong Zhong, Zhixiong Zhong, Wei Weng, Ruiqiang Liu, Jing Gu, Xiaodong Chen, Yongyu BMC Cardiovasc Disord Research Article BACKGROUND: This study aims to investigate the T-cell receptor (TCR) repertoire in patients with acute coronary syndrome (ACS). METHODS: The TCR repertoires of 9 unstable angina patients (UA), 14 acute myocardial infarction patients (AMI) and 9 normal coronary artery (NCA) patients were profiled using high-throughput sequencing (HTS). The clonal diversity of the TCR repertoires in different groups was analyzed, as well as the frequencies of variable (V), diversity (D) and joining(J) gene segments. RESULTS: ACS patients including UA and AMI, showed reduced TCRβ diversity than NCA patients. ACS patients presented higher levels of clonal expansion. The clonotype overlap of complementarity determining region 3(CDR3) was significantly varied between different groups. A total of 10 V genes and 1 J gene were differently utilized between ACS and NCA patients. We identified some shared CDR3 amino acid sequences that were presented in ACS but not in NCA patients. CONCLUSIONS: This study revealed the distinct TCR repertoires in patients with ACS and demonstrated the presence of disease associated T-cell clonotypes. These findings suggested a role of T cells in ACS and provided a new way to explore the mechanisms of ACS. BioMed Central 2020-05-27 /pmc/articles/PMC7254720/ /pubmed/32460698 http://dx.doi.org/10.1186/s12872-020-01538-6 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Liu, Sudong Zhong, Zhixiong Zhong, Wei Weng, Ruiqiang Liu, Jing Gu, Xiaodong Chen, Yongyu Comprehensive analysis of T-cell receptor repertoire in patients with acute coronary syndrome by high-throughput sequencing |
title | Comprehensive analysis of T-cell receptor repertoire in patients with acute coronary syndrome by high-throughput sequencing |
title_full | Comprehensive analysis of T-cell receptor repertoire in patients with acute coronary syndrome by high-throughput sequencing |
title_fullStr | Comprehensive analysis of T-cell receptor repertoire in patients with acute coronary syndrome by high-throughput sequencing |
title_full_unstemmed | Comprehensive analysis of T-cell receptor repertoire in patients with acute coronary syndrome by high-throughput sequencing |
title_short | Comprehensive analysis of T-cell receptor repertoire in patients with acute coronary syndrome by high-throughput sequencing |
title_sort | comprehensive analysis of t-cell receptor repertoire in patients with acute coronary syndrome by high-throughput sequencing |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7254720/ https://www.ncbi.nlm.nih.gov/pubmed/32460698 http://dx.doi.org/10.1186/s12872-020-01538-6 |
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