16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary

Biodiversity monitoring is an essential component of restoration efforts. We sequenced 16S rRNA gene amplicons from sediments and waters of Hunts Point Riverside Park and Soundview Park, located in a historically degraded but recovering urban estuary in New York. In total, 16,165 unique amplicon seq...

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Autores principales: Naro-Maciel, Eugenia, Ingala, Melissa R., Werner, Irena E., Fitzgerald, Allison M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2020
Materias:
Amplicon Sequence Collections
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7256250/
https://www.ncbi.nlm.nih.gov/pubmed/32467263
http://dx.doi.org/10.1128/MRA.00182-20
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author Naro-Maciel, Eugenia
Ingala, Melissa R.
Werner, Irena E.
Fitzgerald, Allison M.
author_facet Naro-Maciel, Eugenia
Ingala, Melissa R.
Werner, Irena E.
Fitzgerald, Allison M.
author_sort Naro-Maciel, Eugenia
collection PubMed
description Biodiversity monitoring is an essential component of restoration efforts. We sequenced 16S rRNA gene amplicons from sediments and waters of Hunts Point Riverside Park and Soundview Park, located in a historically degraded but recovering urban estuary in New York. In total, 16,165 unique amplicon sequence variants were recovered, and Proteobacteria was the dominant phylum.
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spelling pubmed-72562502020-06-04 16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary Naro-Maciel, Eugenia Ingala, Melissa R. Werner, Irena E. Fitzgerald, Allison M. Microbiol Resour Announc Amplicon Sequence Collections Biodiversity monitoring is an essential component of restoration efforts. We sequenced 16S rRNA gene amplicons from sediments and waters of Hunts Point Riverside Park and Soundview Park, located in a historically degraded but recovering urban estuary in New York. In total, 16,165 unique amplicon sequence variants were recovered, and Proteobacteria was the dominant phylum. American Society for Microbiology 2020-05-28 /pmc/articles/PMC7256250/ /pubmed/32467263 http://dx.doi.org/10.1128/MRA.00182-20 Text en Copyright © 2020 Naro-Maciel et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Amplicon Sequence Collections
Naro-Maciel, Eugenia
Ingala, Melissa R.
Werner, Irena E.
Fitzgerald, Allison M.
16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary
title 16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary
title_full 16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary
title_fullStr 16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary
title_full_unstemmed 16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary
title_short 16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary
title_sort 16s rrna amplicon sequencing of urban prokaryotic communities in the south bronx river estuary
topic Amplicon Sequence Collections
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7256250/
https://www.ncbi.nlm.nih.gov/pubmed/32467263
http://dx.doi.org/10.1128/MRA.00182-20
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