Cargando…

Epigenome-wide association study reveals CpG sites related to COG of neuroblastoma

Background. Neuroblastoma (NB) is the most common extracranial solid tumor in infants and children. Its variable location and complex pathogenesis make NB hard for early diagnosis and risk classification. Methodology. We analyzed the methylation data of 236 samples from patients with NB in Therapeut...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhao, Hao, Zhou, Xiaojun, Sun, Hu, Zhao, Dongyun, Liu, Hongfei, Huang, Bin, Li, Xingang, Gu, Yinghao
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Portland Press Ltd. 2020
Materias:	Bioinformatics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7256671/ https://www.ncbi.nlm.nih.gov/pubmed/32378698 http://dx.doi.org/10.1042/BSR20200826

Ejemplares similares

Genome‐wide identification of CpG island methylator phenotype related gene signature as a novel prognostic biomarker of gastric cancer
por: Zeng, Zhuo, et al.
Publicado: (2020)

Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies
por: Luo, Xiangyu, et al.
Publicado: (2019)

CpG Island Mapping by Epigenome Prediction
por: Bock, Christoph, et al.
Publicado: (2007)

CpG Sites Associated with Cigarette Smoking: Analysis of Epigenome-Wide Data from the Sister Study
por: Harlid, Sophia, et al.
Publicado: (2014)

DNA methylation in human epigenomes depends on local topology of CpG sites
por: Lövkvist, Cecilia, et al.
Publicado: (2016)

A Comparative Study of Five Association Tests Based on CpG Set for Epigenome-Wide Association Studies
por: Zhang, Qiuyi, et al.
Publicado: (2016)

Identification of novel hyper- or hypomethylated CpG sites and genes associated with atherosclerotic plaque using an epigenome-wide association study
por: Yamada, Yoshiji, et al.
Publicado: (2018)

Evaluation of single CpG sites as proxies of CpG island methylation states at the genome scale
por: Barrera, Víctor, et al.
Publicado: (2012)

Epigenome-450K-wide methylation signatures of active cigarette smoking: The Young Finns Study
por: Mishra, Pashupati P., et al.
Publicado: (2020)

Identifying CpG sites associated with eczema via random forest screening of epigenome-scale DNA methylation
por: Quraishi, B. M., et al.
Publicado: (2015)

Large epigenome-wide association study identifies multiple novel differentially methylated CpG sites associated with suicidal thoughts and behaviors in veterans
por: Kimbrel, Nathan A., et al.
Publicado: (2023)

Genome-wide identification of methylated CpG sites in nongenital cutaneous warts
por: AL-Eitan, Laith N., et al.
Publicado: (2020)

Identifying fenofibrate responsive CpG sites
por: Cantor, Rita, et al.
Publicado: (2018)

In silico identification of single nucleotide variations at CpG sites regulating CpG island existence and size
por: Shyamala, Nivas, et al.
Publicado: (2022)

Longitudinal epigenome-wide association studies of three male military cohorts reveal multiple CpG sites associated with post-traumatic stress disorder
por: Snijders, Clara, et al.
Publicado: (2020)

Linking the Epigenome to the Genome: Correlation of Different Features to DNA Methylation of CpG Islands
por: Wrzodek, Clemens, et al.
Publicado: (2012)

Preservation of methylated CpG dinucleotides in human CpG islands
por: Panchin, Alexander Y., et al.
Publicado: (2016)

Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites
por: Grandi, Fiorella C., et al.
Publicado: (2015)

CogNet: classification of gene expression data based on ranked active-subnetwork-oriented KEGG pathway enrichment analysis
por: Yousef, Malik, et al.
Publicado: (2021)

CpG Methylation in Aging: Trajectories of Individual Sites
por: Meer, Margarita, et al.
Publicado: (2020)

Suppressive CpG
por: Van Epps, Heather L.
Publicado: (2005)

Factors to preserve CpG-rich sequences in methylated CpG islands
por: Miyahara, Hiroki, et al.
Publicado: (2015)

CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome?
por: Han, Leng, et al.
Publicado: (2009)

Dynamic bimodal changes in CpG and non-CpG methylation genome-wide upon CGGBP1 loss-of-function
por: Patel, Divyesh, et al.
Publicado: (2018)

Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content
por: Mugal, Carina F, et al.
Publicado: (2011)

Single quantum dot-based nanosensor for sensitive detection of 5-methylcytosine at both CpG and non-CpG sites
por: Wang, Zi-yue, et al.
Publicado: (2017)

Methyl CpG binding protein 2 (MeCP2) enhances photodimer formation at methyl-CpG sites but suppresses dimer deamination
por: Cannistraro, Vincent J., et al.
Publicado: (2010)

In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases
por: Arand, Julia, et al.
Publicado: (2012)

CpG and Non-CpG Methylation in Epigenetic Gene Regulation and Brain Function
por: Jang, Hyun Sik, et al.
Publicado: (2017)

A prognostic CpG score derived from epigenome-wide profiling of tumor tissue was independently associated with colorectal cancer survival
por: Jia, Min, et al.
Publicado: (2019)

Identification of Diagnostic CpG Signatures in Patients with Gestational Diabetes Mellitus via Epigenome-Wide Association Study Integrated with Machine Learning
por: Liu, Yan, et al.
Publicado: (2021)

Correction: Single quantum dot-based nanosensor for sensitive detection of 5-methylcytosine at both CpG and non-CpG sites
por: Wang, Zi-yue, et al.
Publicado: (2018)

Cytosine methylation at CpCpG sites triggers accumulation of non-CpG methylation in gene bodies
por: Zabet, Nicolae Radu, et al.
Publicado: (2017)

Mutation saturation for fitness effects at human CpG sites
por: Agarwal, Ipsita, et al.
Publicado: (2021)

Epigenetic inheritance is unfaithful at intermediately methylated CpG sites
por: Hay, Amir D., et al.
Publicado: (2023)

Chromatin Network Analyses: Towards Structure-Function Relationships in Epigenomics
por: Pancaldi, Vera
Publicado: (2021)

Predicting liver cancer on epigenomics data using machine learning
por: Vekariya, Vishalkumar, et al.
Publicado: (2022)

A prognostic nomogram for neuroblastoma in children
por: Li, Xiaozhi, et al.
Publicado: (2019)

Prediction of CpG-island function: CpG clustering vs. sliding-window methods
por: Hackenberg, Michael, et al.
Publicado: (2010)

CpG Methylation Altered the Stability and Structure of the i-Motifs Located in the CpG Islands
por: Oshikawa, Daiki, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_hat409v44272tgscv46lc6r9kj