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Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation

The Banana Bunchy Top Virus (BBTV) is one of the most economically important vector-borne banana diseases throughout the Asia-Pacific Basin and presents a significant challenge to the agricultural sector. Current models of BBTV are largely deterministic, limited by an incomplete understanding of int...

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Autores principales: Varghese, Abhishek, Drovandi, Christopher, Mira, Antonietta, Mengersen, Kerrie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7259802/
https://www.ncbi.nlm.nih.gov/pubmed/32421712
http://dx.doi.org/10.1371/journal.pcbi.1007878
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author Varghese, Abhishek
Drovandi, Christopher
Mira, Antonietta
Mengersen, Kerrie
author_facet Varghese, Abhishek
Drovandi, Christopher
Mira, Antonietta
Mengersen, Kerrie
author_sort Varghese, Abhishek
collection PubMed
description The Banana Bunchy Top Virus (BBTV) is one of the most economically important vector-borne banana diseases throughout the Asia-Pacific Basin and presents a significant challenge to the agricultural sector. Current models of BBTV are largely deterministic, limited by an incomplete understanding of interactions in complex natural systems, and the appropriate identification of parameters. A stochastic network-based Susceptible-Infected-Susceptible model has been created which simulates the spread of BBTV across the subsections of a banana plantation, parameterising nodal recovery, neighbouring and distant infectivity across summer and winter. Findings from posterior results achieved through Markov Chain Monte Carlo approach to approximate Bayesian computation suggest seasonality in all parameters, which are influenced by correlated changes in inspection accuracy, temperatures and aphid activity. This paper demonstrates how the model may be used for monitoring and forecasting of various disease management strategies to support policy-level decision making.
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spelling pubmed-72598022020-06-08 Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation Varghese, Abhishek Drovandi, Christopher Mira, Antonietta Mengersen, Kerrie PLoS Comput Biol Research Article The Banana Bunchy Top Virus (BBTV) is one of the most economically important vector-borne banana diseases throughout the Asia-Pacific Basin and presents a significant challenge to the agricultural sector. Current models of BBTV are largely deterministic, limited by an incomplete understanding of interactions in complex natural systems, and the appropriate identification of parameters. A stochastic network-based Susceptible-Infected-Susceptible model has been created which simulates the spread of BBTV across the subsections of a banana plantation, parameterising nodal recovery, neighbouring and distant infectivity across summer and winter. Findings from posterior results achieved through Markov Chain Monte Carlo approach to approximate Bayesian computation suggest seasonality in all parameters, which are influenced by correlated changes in inspection accuracy, temperatures and aphid activity. This paper demonstrates how the model may be used for monitoring and forecasting of various disease management strategies to support policy-level decision making. Public Library of Science 2020-05-18 /pmc/articles/PMC7259802/ /pubmed/32421712 http://dx.doi.org/10.1371/journal.pcbi.1007878 Text en © 2020 Varghese et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Varghese, Abhishek
Drovandi, Christopher
Mira, Antonietta
Mengersen, Kerrie
Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation
title Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation
title_full Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation
title_fullStr Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation
title_full_unstemmed Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation
title_short Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation
title_sort estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate bayesian computation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7259802/
https://www.ncbi.nlm.nih.gov/pubmed/32421712
http://dx.doi.org/10.1371/journal.pcbi.1007878
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