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Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation
The Banana Bunchy Top Virus (BBTV) is one of the most economically important vector-borne banana diseases throughout the Asia-Pacific Basin and presents a significant challenge to the agricultural sector. Current models of BBTV are largely deterministic, limited by an incomplete understanding of int...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7259802/ https://www.ncbi.nlm.nih.gov/pubmed/32421712 http://dx.doi.org/10.1371/journal.pcbi.1007878 |
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author | Varghese, Abhishek Drovandi, Christopher Mira, Antonietta Mengersen, Kerrie |
author_facet | Varghese, Abhishek Drovandi, Christopher Mira, Antonietta Mengersen, Kerrie |
author_sort | Varghese, Abhishek |
collection | PubMed |
description | The Banana Bunchy Top Virus (BBTV) is one of the most economically important vector-borne banana diseases throughout the Asia-Pacific Basin and presents a significant challenge to the agricultural sector. Current models of BBTV are largely deterministic, limited by an incomplete understanding of interactions in complex natural systems, and the appropriate identification of parameters. A stochastic network-based Susceptible-Infected-Susceptible model has been created which simulates the spread of BBTV across the subsections of a banana plantation, parameterising nodal recovery, neighbouring and distant infectivity across summer and winter. Findings from posterior results achieved through Markov Chain Monte Carlo approach to approximate Bayesian computation suggest seasonality in all parameters, which are influenced by correlated changes in inspection accuracy, temperatures and aphid activity. This paper demonstrates how the model may be used for monitoring and forecasting of various disease management strategies to support policy-level decision making. |
format | Online Article Text |
id | pubmed-7259802 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-72598022020-06-08 Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation Varghese, Abhishek Drovandi, Christopher Mira, Antonietta Mengersen, Kerrie PLoS Comput Biol Research Article The Banana Bunchy Top Virus (BBTV) is one of the most economically important vector-borne banana diseases throughout the Asia-Pacific Basin and presents a significant challenge to the agricultural sector. Current models of BBTV are largely deterministic, limited by an incomplete understanding of interactions in complex natural systems, and the appropriate identification of parameters. A stochastic network-based Susceptible-Infected-Susceptible model has been created which simulates the spread of BBTV across the subsections of a banana plantation, parameterising nodal recovery, neighbouring and distant infectivity across summer and winter. Findings from posterior results achieved through Markov Chain Monte Carlo approach to approximate Bayesian computation suggest seasonality in all parameters, which are influenced by correlated changes in inspection accuracy, temperatures and aphid activity. This paper demonstrates how the model may be used for monitoring and forecasting of various disease management strategies to support policy-level decision making. Public Library of Science 2020-05-18 /pmc/articles/PMC7259802/ /pubmed/32421712 http://dx.doi.org/10.1371/journal.pcbi.1007878 Text en © 2020 Varghese et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Varghese, Abhishek Drovandi, Christopher Mira, Antonietta Mengersen, Kerrie Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation |
title | Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation |
title_full | Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation |
title_fullStr | Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation |
title_full_unstemmed | Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation |
title_short | Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation |
title_sort | estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate bayesian computation |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7259802/ https://www.ncbi.nlm.nih.gov/pubmed/32421712 http://dx.doi.org/10.1371/journal.pcbi.1007878 |
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