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COVID-19 target: A specific target for novel coronavirus detection
An ongoing outbreak of pneumonia associated with a novel coronavirus has been reported worldwide and become a global health problem; hence, the diagnosis and differentiation of this virus from other types of coronavirus is essential to control of the disease. To this end, the analysis of genomics da...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7261075/ https://www.ncbi.nlm.nih.gov/pubmed/32510005 http://dx.doi.org/10.1016/j.genrep.2020.100740 |
_version_ | 1783540439412899840 |
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author | Kakhki, Reza Kamali Kakhki, Mohammad Kamali Neshani, Alireza |
author_facet | Kakhki, Reza Kamali Kakhki, Mohammad Kamali Neshani, Alireza |
author_sort | Kakhki, Reza Kamali |
collection | PubMed |
description | An ongoing outbreak of pneumonia associated with a novel coronavirus has been reported worldwide and become a global health problem; hence, the diagnosis and differentiation of this virus from other types of coronavirus is essential to control of the disease. To this end, the analysis of genomics data plays a vital role in introducing a stronger target and consequently provides better results in laboratory examinations. The modified comparative genomics approach helps us to find novel specific targets by comparing two or more sequences on the nucleotide collection database. We, for the first time, detected ORF8 gene as a potential target for the detection of the novel coronavirus. Unlike previous reported genes (RdRP, E and N genes), ORF8 is entirely specific to the novel coronavirus (COVID-19) and has no cross-reactivity with other kinds of coronavirus. Accordingly, ORF8 gene can be used as an additional confirmatory assay. |
format | Online Article Text |
id | pubmed-7261075 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-72610752020-06-01 COVID-19 target: A specific target for novel coronavirus detection Kakhki, Reza Kamali Kakhki, Mohammad Kamali Neshani, Alireza Gene Rep Article An ongoing outbreak of pneumonia associated with a novel coronavirus has been reported worldwide and become a global health problem; hence, the diagnosis and differentiation of this virus from other types of coronavirus is essential to control of the disease. To this end, the analysis of genomics data plays a vital role in introducing a stronger target and consequently provides better results in laboratory examinations. The modified comparative genomics approach helps us to find novel specific targets by comparing two or more sequences on the nucleotide collection database. We, for the first time, detected ORF8 gene as a potential target for the detection of the novel coronavirus. Unlike previous reported genes (RdRP, E and N genes), ORF8 is entirely specific to the novel coronavirus (COVID-19) and has no cross-reactivity with other kinds of coronavirus. Accordingly, ORF8 gene can be used as an additional confirmatory assay. Elsevier Inc. 2020-09 2020-05-30 /pmc/articles/PMC7261075/ /pubmed/32510005 http://dx.doi.org/10.1016/j.genrep.2020.100740 Text en © 2020 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Kakhki, Reza Kamali Kakhki, Mohammad Kamali Neshani, Alireza COVID-19 target: A specific target for novel coronavirus detection |
title | COVID-19 target: A specific target for novel coronavirus detection |
title_full | COVID-19 target: A specific target for novel coronavirus detection |
title_fullStr | COVID-19 target: A specific target for novel coronavirus detection |
title_full_unstemmed | COVID-19 target: A specific target for novel coronavirus detection |
title_short | COVID-19 target: A specific target for novel coronavirus detection |
title_sort | covid-19 target: a specific target for novel coronavirus detection |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7261075/ https://www.ncbi.nlm.nih.gov/pubmed/32510005 http://dx.doi.org/10.1016/j.genrep.2020.100740 |
work_keys_str_mv | AT kakhkirezakamali covid19targetaspecifictargetfornovelcoronavirusdetection AT kakhkimohammadkamali covid19targetaspecifictargetfornovelcoronavirusdetection AT neshanialireza covid19targetaspecifictargetfornovelcoronavirusdetection |