Cargando…

COVID-19 target: A specific target for novel coronavirus detection

An ongoing outbreak of pneumonia associated with a novel coronavirus has been reported worldwide and become a global health problem; hence, the diagnosis and differentiation of this virus from other types of coronavirus is essential to control of the disease. To this end, the analysis of genomics da...

Descripción completa

Detalles Bibliográficos
Autores principales: Kakhki, Reza Kamali, Kakhki, Mohammad Kamali, Neshani, Alireza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7261075/
https://www.ncbi.nlm.nih.gov/pubmed/32510005
http://dx.doi.org/10.1016/j.genrep.2020.100740
_version_ 1783540439412899840
author Kakhki, Reza Kamali
Kakhki, Mohammad Kamali
Neshani, Alireza
author_facet Kakhki, Reza Kamali
Kakhki, Mohammad Kamali
Neshani, Alireza
author_sort Kakhki, Reza Kamali
collection PubMed
description An ongoing outbreak of pneumonia associated with a novel coronavirus has been reported worldwide and become a global health problem; hence, the diagnosis and differentiation of this virus from other types of coronavirus is essential to control of the disease. To this end, the analysis of genomics data plays a vital role in introducing a stronger target and consequently provides better results in laboratory examinations. The modified comparative genomics approach helps us to find novel specific targets by comparing two or more sequences on the nucleotide collection database. We, for the first time, detected ORF8 gene as a potential target for the detection of the novel coronavirus. Unlike previous reported genes (RdRP, E and N genes), ORF8 is entirely specific to the novel coronavirus (COVID-19) and has no cross-reactivity with other kinds of coronavirus. Accordingly, ORF8 gene can be used as an additional confirmatory assay.
format Online
Article
Text
id pubmed-7261075
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Elsevier Inc.
record_format MEDLINE/PubMed
spelling pubmed-72610752020-06-01 COVID-19 target: A specific target for novel coronavirus detection Kakhki, Reza Kamali Kakhki, Mohammad Kamali Neshani, Alireza Gene Rep Article An ongoing outbreak of pneumonia associated with a novel coronavirus has been reported worldwide and become a global health problem; hence, the diagnosis and differentiation of this virus from other types of coronavirus is essential to control of the disease. To this end, the analysis of genomics data plays a vital role in introducing a stronger target and consequently provides better results in laboratory examinations. The modified comparative genomics approach helps us to find novel specific targets by comparing two or more sequences on the nucleotide collection database. We, for the first time, detected ORF8 gene as a potential target for the detection of the novel coronavirus. Unlike previous reported genes (RdRP, E and N genes), ORF8 is entirely specific to the novel coronavirus (COVID-19) and has no cross-reactivity with other kinds of coronavirus. Accordingly, ORF8 gene can be used as an additional confirmatory assay. Elsevier Inc. 2020-09 2020-05-30 /pmc/articles/PMC7261075/ /pubmed/32510005 http://dx.doi.org/10.1016/j.genrep.2020.100740 Text en © 2020 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Kakhki, Reza Kamali
Kakhki, Mohammad Kamali
Neshani, Alireza
COVID-19 target: A specific target for novel coronavirus detection
title COVID-19 target: A specific target for novel coronavirus detection
title_full COVID-19 target: A specific target for novel coronavirus detection
title_fullStr COVID-19 target: A specific target for novel coronavirus detection
title_full_unstemmed COVID-19 target: A specific target for novel coronavirus detection
title_short COVID-19 target: A specific target for novel coronavirus detection
title_sort covid-19 target: a specific target for novel coronavirus detection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7261075/
https://www.ncbi.nlm.nih.gov/pubmed/32510005
http://dx.doi.org/10.1016/j.genrep.2020.100740
work_keys_str_mv AT kakhkirezakamali covid19targetaspecifictargetfornovelcoronavirusdetection
AT kakhkimohammadkamali covid19targetaspecifictargetfornovelcoronavirusdetection
AT neshanialireza covid19targetaspecifictargetfornovelcoronavirusdetection