Cargando…

A Chromosome-Scale Assembly of the Garden Orach (Atriplex hortensis L.) Genome Using Oxford Nanopore Sequencing

Atriplex hortensis (2n = 2x = 18, 1C genome size ∼1.1 gigabases), also known as garden orach and mountain-spinach, is a highly nutritious, broadleaf annual of the Amaranthaceae-Chenopodiaceae alliance (Chenopodiaceae sensu stricto, subfam. Chenopodioideae) that has spread in cultivation from its nat...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hunt, Spencer P., Jarvis, David E., Larsen, Dallas J., Mosyakin, Sergei L., Kolano, Bozena A., Jackson, Eric W., Martin, Sara L., Jellen, Eric N., Maughan, Peter J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2020
Materias:	Plant Science
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7261831/ https://www.ncbi.nlm.nih.gov/pubmed/32523593 http://dx.doi.org/10.3389/fpls.2020.00624

Ejemplares similares

Evaluating the resistance mechanism of Atriplex leucoclada (Orache) to salt and water stress; A potential crop for biosaline agriculture
por: Alam, Hasnain, et al.
Publicado: (2022)

An Alfin-like gene from Atriplex hortensis enhances salt and drought tolerance and abscisic acid response in transgenic Arabidopsis
por: Tao, Jian-Jun, et al.
Publicado: (2018)

Unveiling Alternative Oxidation Pathways and Antioxidant and Cardioprotective Potential of Amaranthin-Type Betacyanins from Spinach-like Atriplex hortensis var. ‘Rubra’
por: Kumorkiewicz-Jamro, Agnieszka, et al.
Publicado: (2023)

The Oxford Physic Garden
por: Power, D’Arcy
Publicado: (1919)

Cytotoxicity of Atriplex confertifolia
por: Capua, Christopher J., et al.
Publicado: (2010)

Endophyte Microbiome Diversity in Micropropagated Atriplex canescens and Atriplex torreyi var griffithsii
por: Lucero, Mary E., et al.
Publicado: (2011)

The use of Oxford Nanopore native barcoding for complete genome assembly
por: Bayliss, Sion C, et al.
Publicado: (2017)

Dataset of genome identification and characterization of microsatellite markers loci in Atriplex atacamensis and Atriplex deserticola
por: Correa, Francisco, et al.
Publicado: (2019)

Escape and avoidance learning in the earthworm Eisenia hortensis
por: Wilson, W. Jeffrey, et al.
Publicado: (2014)

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
por: Jain, Miten, et al.
Publicado: (2016)

Free Radical Scavenging Activity of Majorana hortensis leaves
por: Palaniswamy, Radha, et al.
Publicado: (2011)

Erratum to: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
por: Jain, Miten, et al.
Publicado: (2016)

Nanocall: an open source basecaller for Oxford Nanopore sequencing data
por: David, Matei, et al.
Publicado: (2017)

Recovery of small plasmid sequences via Oxford Nanopore sequencing
por: Wick, Ryan R., et al.
Publicado: (2021)

Assessing the performance of the Oxford Nanopore Technologies MinION
por: Laver, T., et al.
Publicado: (2015)

Oxford Nanopore MinION Sequencing and Genome Assembly
por: Lu, Hengyun, et al.
Publicado: (2016)

Oxford Nanopore sequencing: new opportunities for plant genomics?
por: Dumschott, Kathryn, et al.
Publicado: (2020)

Is Oxford Nanopore sequencing ready for analyzing complex microbiomes?
por: Kerkhof, Lee J
Publicado: (2021)

Optimized use of Oxford Nanopore flowcells for hybrid assemblies
por: Lipworth, Samuel, et al.
Publicado: (2020)

Application of Oxford Nanopore Technology to Plant Virus Detection
por: Liefting, Lia W., et al.
Publicado: (2021)

Atriplex canescens: A new host for Cistanche deserticola
por: Wang, Fangming, et al.
Publicado: (2021)

Anticonvulsant effect of Satureja hortensis aerial parts extracts in mice
por: Zolfagharian, Farzaneh, et al.
Publicado: (2016)

Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies
por: Sutton, John M., et al.
Publicado: (2021)

Performance of neural network basecalling tools for Oxford Nanopore sequencing
por: Wick, Ryan R., et al.
Publicado: (2019)

A comparison of Oxford nanopore library strategies for bacterial genomics
por: Sauvage, Thomas, et al.
Publicado: (2023)

A new species of Atriplex (Amaranthaceae) from the Indian subcontinent
por: Sukhorukov, Alexander P., et al.
Publicado: (2023)

Clinical evaluation of the essential oil of “Satureja Hortensis” for the treatment of denture stomatitis
por: Sabzghabaee, Ali Mohammad, et al.
Publicado: (2012)

The antiaging property of aqueous extract of Millingtonia hortensis flowers in aging neuron
por: Jumnongprakhon, Pichaya, et al.
Publicado: (2021)

Flavonoid Accumulation in an Aseptic Culture of Summer Savory (Satureja hortensis L.)
por: Khlebnikova, Darya A., et al.
Publicado: (2022)

Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis
por: Weirather, Jason L, et al.
Publicado: (2017)

Endosperm of Angiosperms and Genomic Imprinting
por: Kordyum, Elizabeth L., et al.
Publicado: (2020)

Oxford Nanopore MinION Direct RNA-Seq for Systems Biology
por: Pyatnitskiy, Mikhail A., et al.
Publicado: (2021)

BoardION: real-time monitoring of Oxford Nanopore sequencing instruments
por: Bruno, Aimeric, et al.
Publicado: (2021)

Extraction and Oxford Nanopore sequencing of genomic DNA from filamentous Actinobacteria
por: Alvarez-Arevalo, Maria, et al.
Publicado: (2022)

Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing
por: Wick, Ryan R., et al.
Publicado: (2023)

Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing
por: Erkes, Annett, et al.
Publicado: (2023)

Targeted haplotyping in pharmacogenomics using Oxford Nanopore Technologies’ adaptive sampling
por: Deserranno, Koen, et al.
Publicado: (2023)

Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis
por: Sahlin, Kristoffer, et al.
Publicado: (2021)

Protective effect of Atriplex suberecta extract against oxidative and apoptotic hepatotoxicity
por: Parvez, Mohammad K., et al.
Publicado: (2018)

Characterization of the complete plastome of Atriplex centralasiatica (Chenopodiaceae), an annual halophytic herb
por: Zhang, Xue-Jie, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_i45vkqqk8kopji3ultkm6fqu4r