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Population dataset for 21 simple tandem repeat loci in the Akan population of Ghana

Short tandem repeat (STR) loci are widely used as genetic marker for ancestral and forensic analyses. The latter application includes for paternity testing and DNA profiling of samples collected from scenes of crime and suspects. This survey provides the first dataset for 21 STR loci across the Akan...

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Autores principales: Kofi, Abban Edward, Hakim, Hashom Mohd, Khan, Hussein Omar, Ismail, Siti Afifah, Ghansah, Anita, Haslindawaty, Abd Rashid Nur, Shamsuddin, Shaharum, Aziz, Mohd Yusmaidie, Chambers, Geoffrey Keith, Edinur, Hisham Atan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7262416/
https://www.ncbi.nlm.nih.gov/pubmed/32490095
http://dx.doi.org/10.1016/j.dib.2020.105746
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author Kofi, Abban Edward
Hakim, Hashom Mohd
Khan, Hussein Omar
Ismail, Siti Afifah
Ghansah, Anita
Haslindawaty, Abd Rashid Nur
Shamsuddin, Shaharum
Aziz, Mohd Yusmaidie
Chambers, Geoffrey Keith
Edinur, Hisham Atan
author_facet Kofi, Abban Edward
Hakim, Hashom Mohd
Khan, Hussein Omar
Ismail, Siti Afifah
Ghansah, Anita
Haslindawaty, Abd Rashid Nur
Shamsuddin, Shaharum
Aziz, Mohd Yusmaidie
Chambers, Geoffrey Keith
Edinur, Hisham Atan
author_sort Kofi, Abban Edward
collection PubMed
description Short tandem repeat (STR) loci are widely used as genetic marker for ancestral and forensic analyses. The latter application includes for paternity testing and DNA profiling of samples collected from scenes of crime and suspects. This survey provides the first dataset for 21 STR loci across the Akan population in Ghana by genotyping of 109 unrelated healthy individuals using Investigator 24plex kit. None of the STR loci screened deviated from Hardy-Weinberg equilibrium after applying Bonferroni correction. Overall, 224 unique alleles were observed with allele frequencies ranging from 0.005 to 0.518. The combined match probability, combined power of exclusion and combined power discrimination were 1 in 4.07 × 10(−25), 0.999999999 and 1, respectively. Principal coordinate analysis carried out using 21 STR allele frequency data mapped the Akans with Nigerian subpopulation groups (Hausa, Igbo and Yoruba), but separated from Thais of Thailand, Chechen of Jordan and Tijuana of Mexico.
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spelling pubmed-72624162020-06-01 Population dataset for 21 simple tandem repeat loci in the Akan population of Ghana Kofi, Abban Edward Hakim, Hashom Mohd Khan, Hussein Omar Ismail, Siti Afifah Ghansah, Anita Haslindawaty, Abd Rashid Nur Shamsuddin, Shaharum Aziz, Mohd Yusmaidie Chambers, Geoffrey Keith Edinur, Hisham Atan Data Brief Genetics, Genomics and Molecular Biology Short tandem repeat (STR) loci are widely used as genetic marker for ancestral and forensic analyses. The latter application includes for paternity testing and DNA profiling of samples collected from scenes of crime and suspects. This survey provides the first dataset for 21 STR loci across the Akan population in Ghana by genotyping of 109 unrelated healthy individuals using Investigator 24plex kit. None of the STR loci screened deviated from Hardy-Weinberg equilibrium after applying Bonferroni correction. Overall, 224 unique alleles were observed with allele frequencies ranging from 0.005 to 0.518. The combined match probability, combined power of exclusion and combined power discrimination were 1 in 4.07 × 10(−25), 0.999999999 and 1, respectively. Principal coordinate analysis carried out using 21 STR allele frequency data mapped the Akans with Nigerian subpopulation groups (Hausa, Igbo and Yoruba), but separated from Thais of Thailand, Chechen of Jordan and Tijuana of Mexico. Elsevier 2020-05-22 /pmc/articles/PMC7262416/ /pubmed/32490095 http://dx.doi.org/10.1016/j.dib.2020.105746 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Genetics, Genomics and Molecular Biology
Kofi, Abban Edward
Hakim, Hashom Mohd
Khan, Hussein Omar
Ismail, Siti Afifah
Ghansah, Anita
Haslindawaty, Abd Rashid Nur
Shamsuddin, Shaharum
Aziz, Mohd Yusmaidie
Chambers, Geoffrey Keith
Edinur, Hisham Atan
Population dataset for 21 simple tandem repeat loci in the Akan population of Ghana
title Population dataset for 21 simple tandem repeat loci in the Akan population of Ghana
title_full Population dataset for 21 simple tandem repeat loci in the Akan population of Ghana
title_fullStr Population dataset for 21 simple tandem repeat loci in the Akan population of Ghana
title_full_unstemmed Population dataset for 21 simple tandem repeat loci in the Akan population of Ghana
title_short Population dataset for 21 simple tandem repeat loci in the Akan population of Ghana
title_sort population dataset for 21 simple tandem repeat loci in the akan population of ghana
topic Genetics, Genomics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7262416/
https://www.ncbi.nlm.nih.gov/pubmed/32490095
http://dx.doi.org/10.1016/j.dib.2020.105746
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